Click here to switch to the map view.

The map label for this gene is spmB [H]

Identifier: 220932021

GI number: 220932021

Start: 1279522

End: 1280052

Strand: Reverse

Name: spmB [H]

Synonym: Hore_11840

Alternate gene names: 220932021

Gene position: 1280052-1279522 (Counterclockwise)

Preceding gene: 220932022

Following gene: 220932020

Centisome position: 49.65

GC content: 31.45

Gene sequence:

>531_bases
ATGGAATTATTTTTCGTAGTATCCATCTGGGCTATTCCCCTTTTTTTTGTTATTATTCTTATATATGGTTACTTTAAAGG
TATTAATTTATATGAAACATTTATTGAAGGTGCGGCTGAAGGTTTTAATACAGTTGTAAAAATAACCCCATATTTACTGG
CAATGATGGTAGCTATTAATATTTTTAAGGAATCAGGAGCCCTGAAAATATTTATTAATATTTTAAAACCTTTTTTTAGC
TATCTTCAAATACCAGAACCGGTGATTCCATTATTATTTTTAAGACCACTGTCAGGCAGCGCTTCTCTATCTTATGCCAG
TCAAATAATGAAACAGTTTGGCCCTGATTCATTTATAGGGAATCTTGCTTCTACAGTTCAGGGAAGTACAGAAACTACAT
TTTATATCCTGGCAGTTTACTTCGGGGCTATTGGAATAAAACACTACAGGTATTCAATTATCGTAGGATTGATTGCTGAT
GTTGCTGGATTTTTTGCTGCTATATTTATATGTAAACATATATTTTTATAA

Upstream 100 bases:

>100_bases
AATTATTGTAGCTACAACAATATTTGCAACAACTGTTTCAACCATAACTGCTTTAATTCTGGATAAGGTTTTTAGAATTT
ATACAGGGGGGGATTAGTCT

Downstream 100 bases:

>100_bases
AACTTATAATAATTATGTCCCTTAAGTTGTAACTTTATTGATTGTTCTGTATAATAAAATAAACACAATCTTAATTGAAC
ACACCATTAAATTGTAAATC

Product: nucleoside recognition domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MELFFVVSIWAIPLFFVIILIYGYFKGINLYETFIEGAAEGFNTVVKITPYLLAMMVAINIFKESGALKIFINILKPFFS
YLQIPEPVIPLLFLRPLSGSASLSYASQIMKQFGPDSFIGNLASTVQGSTETTFYILAVYFGAIGIKHYRYSIIVGLIAD
VAGFFAAIFICKHIFL

Sequences:

>Translated_176_residues
MELFFVVSIWAIPLFFVIILIYGYFKGINLYETFIEGAAEGFNTVVKITPYLLAMMVAINIFKESGALKIFINILKPFFS
YLQIPEPVIPLLFLRPLSGSASLSYASQIMKQFGPDSFIGNLASTVQGSTETTFYILAVYFGAIGIKHYRYSIIVGLIAD
VAGFFAAIFICKHIFL
>Mature_176_residues
MELFFVVSIWAIPLFFVIILIYGYFKGINLYETFIEGAAEGFNTVVKITPYLLAMMVAINIFKESGALKIFINILKPFFS
YLQIPEPVIPLLFLRPLSGSASLSYASQIMKQFGPDSFIGNLASTVQGSTETTFYILAVYFGAIGIKHYRYSIIVGLIAD
VAGFFAAIFICKHIFL

Specific function: Involved in spore core dehydration; might be involved in the transport of something into or out of the forespore or could be required for some modification of the cortex peptidoglycan structure [H]

COG id: COG0700

COG function: function code S; Uncharacterized membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the spmB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011642 [H]

Pfam domain/function: PF07670 Gate [H]

EC number: NA

Molecular weight: Translated: 19644; Mature: 19644

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFFVVSIWAIPLFFVIILIYGYFKGINLYETFIEGAAEGFNTVVKITPYLLAMMVAIN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFKESGALKIFINILKPFFSYLQIPEPVIPLLFLRPLSGSASLSYASQIMKQFGPDSFIG
HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHH
NLASTVQGSTETTFYILAVYFGAIGIKHYRYSIIVGLIADVAGFFAAIFICKHIFL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELFFVVSIWAIPLFFVIILIYGYFKGINLYETFIEGAAEGFNTVVKITPYLLAMMVAIN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFKESGALKIFINILKPFFSYLQIPEPVIPLLFLRPLSGSASLSYASQIMKQFGPDSFIG
HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHH
NLASTVQGSTETTFYILAVYFGAIGIKHYRYSIIVGLIADVAGFFAAIFICKHIFL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 1548223; 7642500 [H]