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The map label for this gene is ytlD [H]

Identifier: 220931988

GI number: 220931988

Start: 1240588

End: 1241424

Strand: Reverse

Name: ytlD [H]

Synonym: Hore_11490

Alternate gene names: 220931988

Gene position: 1241424-1240588 (Counterclockwise)

Preceding gene: 220931989

Following gene: 220931987

Centisome position: 48.15

GC content: 35.48

Gene sequence:

>837_bases
ATGTCCAGACGTAAAGGTTTTTTTTATAGATGGCTTACCAGGGAGGCAGTATCACCAGATCATGCTGATTATTTGTATGG
ATTAAGGAAAAGAGCTATAAGTATAAAATTTTTTCAGATATTAATAATTGTTTTATTATTTACTACCTGGGAATTATTAA
GTCATTTTGGTGTGATAAATACCTTTCTTGTCAGTCAACCCAGTAAAATTTTAAGCCTTTTAGTAAAAATGACGCAGAAT
GGACAATTGCTTAACCATATTGGTGTTACTGTAACTGAAAATATTATTGGATTTATATCGGGTACACTTCTGGGAACCCT
GATAGCTATTATACTCTGGTGGTTTGAATACCTCTATGACCTCCTGGAACCATATATTGTTATCCTTAATAGTATTCCTA
AAGTAGCCCTGGGGCCTGTCATCATTGTATGGATGGGAAATGGCCCTCAGGCAATAATCGTTATGGCCCTGCTAATTTCG
GTTATTGTTACCATAATGATGATGATTAATGGCTTTAGAGAAGTAGAAGGAAACCTGGTTAAACTACTGTCAACCCTGGG
AGCATCAAAAAAACAGGTATTGTTTAAGGTTATTTTACCAGCGAGTATTCCTACCATATTTTCTGCCTTAAAGGTAAGTG
TGGGATTGTCTATGGTAGGAACAATAGTAGGTGAATTCCTGGTCTCAAAAGCAGGTCTCGGTTATTTAATTGTTTACGGT
GGTCAGGTGTTTAATCTGCATCTGGTTATGATGAGTATTATCCTGTTATGTTTAATTGCTGGATTAATGTACTATATAAT
TGTTAAACTGGAGCAACTGGTAATTAAATGGCGTTAA

Upstream 100 bases:

>100_bases
GTTGATATTGAGTTTGAAAAGGGCCTGACGCCATTGCAGAAGAGAAATATAAAACTATTCCAGGATTATTTTAACAACAT
CTGGAAGGAGTTAGATATTA

Downstream 100 bases:

>100_bases
ACTTGCAGGAATTTCAATACCTTATTTAGAATATAAAAATATGTTACTTGATTATGTATATAATAGTATTTATTGTTGGA
GGAGAAAAAATGATATTTGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSRRKGFFYRWLTREAVSPDHADYLYGLRKRAISIKFFQILIIVLLFTTWELLSHFGVINTFLVSQPSKILSLLVKMTQN
GQLLNHIGVTVTENIIGFISGTLLGTLIAIILWWFEYLYDLLEPYIVILNSIPKVALGPVIIVWMGNGPQAIIVMALLIS
VIVTIMMMINGFREVEGNLVKLLSTLGASKKQVLFKVILPASIPTIFSALKVSVGLSMVGTIVGEFLVSKAGLGYLIVYG
GQVFNLHLVMMSIILLCLIAGLMYYIIVKLEQLVIKWR

Sequences:

>Translated_278_residues
MSRRKGFFYRWLTREAVSPDHADYLYGLRKRAISIKFFQILIIVLLFTTWELLSHFGVINTFLVSQPSKILSLLVKMTQN
GQLLNHIGVTVTENIIGFISGTLLGTLIAIILWWFEYLYDLLEPYIVILNSIPKVALGPVIIVWMGNGPQAIIVMALLIS
VIVTIMMMINGFREVEGNLVKLLSTLGASKKQVLFKVILPASIPTIFSALKVSVGLSMVGTIVGEFLVSKAGLGYLIVYG
GQVFNLHLVMMSIILLCLIAGLMYYIIVKLEQLVIKWR
>Mature_277_residues
SRRKGFFYRWLTREAVSPDHADYLYGLRKRAISIKFFQILIIVLLFTTWELLSHFGVINTFLVSQPSKILSLLVKMTQNG
QLLNHIGVTVTENIIGFISGTLLGTLIAIILWWFEYLYDLLEPYIVILNSIPKVALGPVIIVWMGNGPQAIIVMALLISV
IVTIMMMINGFREVEGNLVKLLSTLGASKKQVLFKVILPASIPTIFSALKVSVGLSMVGTIVGEFLVSKAGLGYLIVYGG
QVFNLHLVMMSIILLCLIAGLMYYIIVKLEQLVIKWR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=228, Percent_Identity=26.7543859649123, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786564, Length=213, Percent_Identity=22.5352112676056, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31121; Mature: 30990

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRKGFFYRWLTREAVSPDHADYLYGLRKRAISIKFFQILIIVLLFTTWELLSHFGVIN
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLVSQPSKILSLLVKMTQNGQLLNHIGVTVTENIIGFISGTLLGTLIAIILWWFEYLYD
HHHHCCHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEPYIVILNSIPKVALGPVIIVWMGNGPQAIIVMALLISVIVTIMMMINGFREVEGNLV
HHHHHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLLSTLGASKKQVLFKVILPASIPTIFSALKVSVGLSMVGTIVGEFLVSKAGLGYLIVYG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GQVFNLHLVMMSIILLCLIAGLMYYIIVKLEQLVIKWR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRRKGFFYRWLTREAVSPDHADYLYGLRKRAISIKFFQILIIVLLFTTWELLSHFGVIN
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLVSQPSKILSLLVKMTQNGQLLNHIGVTVTENIIGFISGTLLGTLIAIILWWFEYLYD
HHHHCCHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEPYIVILNSIPKVALGPVIIVWMGNGPQAIIVMALLISVIVTIMMMINGFREVEGNLV
HHHHHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLLSTLGASKKQVLFKVILPASIPTIFSALKVSVGLSMVGTIVGEFLVSKAGLGYLIVYG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GQVFNLHLVMMSIILLCLIAGLMYYIIVKLEQLVIKWR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]