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The map label for this gene is rpmB

Identifier: 220931851

GI number: 220931851

Start: 1098454

End: 1098684

Strand: Reverse

Name: rpmB

Synonym: Hore_10080

Alternate gene names: 220931851

Gene position: 1098684-1098454 (Counterclockwise)

Preceding gene: 220931858

Following gene: 220931821

Centisome position: 42.62

GC content: 40.69

Gene sequence:

>231_bases
ATGTCCAGGGTTTGTGAAATATGTGGTAAAGGAACTGTTAAAGCCAATAGAATTACCCGCCGTGGTAAAGCAAAAAAAGA
AGGCGGTGTTGGGAAACACATTACTAAAACATCCAGACGGAGGCAAAAGCCCAACCTGGTTAAAGTTAAAGCTATTGTAG
ACGGCAGACCAAAGCGAATAAAAGTATGCACAAAGTGTTTAAAATCAGGGCGGGTTGAAAGAGCATATTAA

Upstream 100 bases:

>100_bases
TGCCCTTGCTAAATAAATATTAATTATGTTAAAATAATTTCTAGGTGTTTATACTTATATTAACCAGACACTGTAATGAA
ACAACCTAGGAGGTGGAAAA

Downstream 100 bases:

>100_bases
TTGTTCAGAGGAGGTTATTCATTATCACATGGAAAGATGAATAAGCCTCCTCTTTTTTTATTGACATCTTATCTTTAACC
AGCGTCAATAACAGTTTCAA

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSRVCEICGKGTVKANRITRRGKAKKEGGVGKHITKTSRRRQKPNLVKVKAIVDGRPKRIKVCTKCLKSGRVERAY

Sequences:

>Translated_76_residues
MSRVCEICGKGTVKANRITRRGKAKKEGGVGKHITKTSRRRQKPNLVKVKAIVDGRPKRIKVCTKCLKSGRVERAY
>Mature_75_residues
SRVCEICGKGTVKANRITRRGKAKKEGGVGKHITKTSRRRQKPNLVKVKAIVDGRPKRIKVCTKCLKSGRVERAY

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_HALOH (B8CWU5)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002508759.1
- GeneID:   7314596
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_10080
- HOGENOM:   HBG597003
- OMA:   MAKVCEV
- ProtClustDB:   CLSK2806351
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 8520; Mature: 8389

Theoretical pI: Translated: 11.87; Mature: 11.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVCEICGKGTVKANRITRRGKAKKEGGVGKHITKTSRRRQKPNLVKVKAIVDGRPKRI
CCCHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHH
KVCTKCLKSGRVERAY
HHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRVCEICGKGTVKANRITRRGKAKKEGGVGKHITKTSRRRQKPNLVKVKAIVDGRPKRI
CCHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHH
KVCTKCLKSGRVERAY
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA