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The map label for this gene is rbsB [H]

Identifier: 220931797

GI number: 220931797

Start: 1030363

End: 1031325

Strand: Direct

Name: rbsB [H]

Synonym: Hore_09540

Alternate gene names: 220931797

Gene position: 1030363-1031325 (Clockwise)

Preceding gene: 220931796

Following gene: 220931798

Centisome position: 39.97

GC content: 35.93

Gene sequence:

>963_bases
ATGACTAGGAAAGCGTTATTTGTTGCTTTGGTAGTATTGTTGCTCACAGTTGGATTTTTAAGTGTAGGAGATGTACAGGC
ATCAGAAAAATATCAAATTTTAGTTAGTCCAAAAGGTTTAAGTCAATCTTATTGGTTAACTGTAAAAGCTGGGGCAGAAG
CAGCTGCTAAAGAATTAGGTGCAGAAATTGTTTGGAGAGGTCCTGCTCAGGAAACAGATGTGGCTAAACAAGTAAACGTA
ATCAATGATTTTGTAAACAAAAAGATAGACGCTATTGTTGTTGCTGCTACTGATGCTAATGCTTTAATACCACCTTTAAA
AAGGGCACATGAAGCGGGAATTCCTGTAATTACTATAGATTCTGGTATTAATGCAGATTTTCCTATATCTCATATAGCTA
CCAATAATAAAGAAGCTGCCAAGAAAGCGGCTGAAGTTTTAGCAAATATAATTGGTAAAAAAGGTGAGGTTGCCTGTATA
CCTTTTGTAGCTGGTGCCGCAACTTCTATAGCCCGTGAAAATGGTTTTAAAGAGGGAATTTCAAATTATAAAAATATTGA
TTTAGTAGCTGTTCAGTATTCCCAGAGTGATTATGCTACAGCAATGAAAGTAACTGAGAATATTTTAACAGCACATCCAA
ATTTGAAAGGTATTTTTGCAGCTAATGAAGCAGGAGCAGTTGGTGCGGCAAGAGCCTTGAAAGCTAGAGGAAAAACAGCA
GATGTAATATTAGTTGGTTTTGATGCAGCACAAACTGAGATAGATGCTATGAAAGAAGGTATTATTGATGCCCTGATTGT
ACAAAGACCATATATGATGGGATATGAAGGGGTAAAAAATGCTGTAGCTGCTTTGGAAGGAGAAGAAGTTGAAAAATTAA
TTGATACAGGAGTAGTTGTAGCCACTCCAGATAACATGAATGACCCTGAAGTTTATAAAGTCTTATTTCCATTAAAACAA
TAA

Upstream 100 bases:

>100_bases
AGTCATATAATTATAGGAGTATTCAACAAAGAGAATTACACAAAAGCAACATATATTTTAAAAAAATTAAAAATATTAAA
AAACAGGAGGAGATTTTAAG

Downstream 100 bases:

>100_bases
AATAACCTATGTATAAACCATTCTCTTCTTCTCTGATCAGAATCAGAGAAGAAGAGAATGGATACAGAAAGGAGGGTTTC
TTCTTGAACTATGAAATTGC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTRKALFVALVVLLLTVGFLSVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNV
INDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAAEVLANIIGKKGEVACI
PFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGKTA
DVILVGFDAAQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMNDPEVYKVLFPLKQ

Sequences:

>Translated_320_residues
MTRKALFVALVVLLLTVGFLSVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNV
INDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAAEVLANIIGKKGEVACI
PFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGKTA
DVILVGFDAAQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMNDPEVYKVLFPLKQ
>Mature_319_residues
TRKALFVALVVLLLTVGFLSVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVI
NDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAAEVLANIIGKKGEVACIP
FVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGKTAD
VILVGFDAAQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMNDPEVYKVLFPLKQ

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=291, Percent_Identity=30.9278350515464, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790526, Length=271, Percent_Identity=30.9963099630996, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787795, Length=219, Percent_Identity=27.8538812785388, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1790674, Length=282, Percent_Identity=29.0780141843972, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788898, Length=226, Percent_Identity=25.6637168141593, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33886; Mature: 33755

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKALFVALVVLLLTVGFLSVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHCC
AEIVWRGPAQETDVAKQVNVINDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITID
CEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEEC
SGINADFPISHIATNNKEAAKKAAEVLANIIGKKGEVACIPFVAGAATSIARENGFKEGI
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCHHHHH
SNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGKTA
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
DVILVGFDAAQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVV
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHCCHHHHHHHHHCCEEE
ATPDNMNDPEVYKVLFPLKQ
ECCCCCCCCHHEEEEECCCC
>Mature Secondary Structure 
TRKALFVALVVLLLTVGFLSVGDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELG
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHCC
AEIVWRGPAQETDVAKQVNVINDFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITID
CEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEEC
SGINADFPISHIATNNKEAAKKAAEVLANIIGKKGEVACIPFVAGAATSIARENGFKEGI
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCHHHHH
SNYKNIDLVAVQYSQSDYATAMKVTENILTAHPNLKGIFAANEAGAVGAARALKARGKTA
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
DVILVGFDAAQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVV
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHCCHHHHHHHHHCCEEE
ATPDNMNDPEVYKVLFPLKQ
ECCCCCCCCHHEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]