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The map label for this gene is yggS [C]

Identifier: 220931765

GI number: 220931765

Start: 994799

End: 995491

Strand: Direct

Name: yggS [C]

Synonym: Hore_09220

Alternate gene names: 220931765

Gene position: 994799-995491 (Clockwise)

Preceding gene: 220931764

Following gene: 220931766

Centisome position: 38.59

GC content: 36.51

Gene sequence:

>693_bases
GTGGTTACCAAAGACTTACAAACAAGGCTGGAAGAGATTAATAAGAGAATCGATGATGCCACCCGCAGATCCGGTAGAAA
GGATAAAGTTAAACTTTTACCTGTTAGCAAAGGACAATCCCCTGAAAAAATTAAATATTTTCAGAGACAGGGATTTACTA
TATTTGGAGAAAGCAGGGTTCAGGAATTAAGGGAGAAAGATGAGAAACTAGATGGAGTTGAGTGGCACTTTATTGGTCAT
TTGCAGCGTAATAAAGTAAAATATTTAATGAGGATGGAAAACTGTACCTTAATACATTCTCTGGATAGCTGGCGCCTGGC
CAGGACAATAGATAAAAGGGCCAGAAAAAATAACAGGAAGATACCTGTCCTGGTGCAGGTTAATGTTGCCCGTGATCCCA
ATAAATTTGGTATTGAGCCTTCAGAAGTAAAGGATTTTGTTTATGAGGTATCTAAATTAGAAAACATAAGAGTAGAGGGA
TTAATGACCATAGTTCCTTATTCTGAAAACCCTGAAGAAGCCAGGCCATATTTTAAACAAATGAATAACCTGAAAAACAT
GTTATGTGATAAAGGTTTTAATGTAAAAGAGCTGTCAATGGGGATGTCTAATGATTTTGAAGTAGCCATAGAGGAAGGGG
CTACCATAATAAGAATAGGTACAAAATTATTTGGTGAAAGGGTATACAATTAA

Upstream 100 bases:

>100_bases
GATGGTACCAGTAAAAGGGTTGTTGTGGAAGGTATAGAAGTCGGAGATAAAGTTGTAATTAACCCTGAGGTAATTAATTA
CGGCTGGGAGGTGGAGTAAA

Downstream 100 bases:

>100_bases
GGAGGTTGATTACTGTTGGGGGTTAAGTCTTTCTGGGATAATTTTCTTGATTTTTTTGGACTAAATGAAGAGCTTGTTGA
AACTGAAGATGAGAATCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MVTKDLQTRLEEINKRIDDATRRSGRKDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRVQELREKDEKLDGVEWHFIGH
LQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRKIPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEG
LMTIVPYSENPEEARPYFKQMNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGERVYN

Sequences:

>Translated_230_residues
MVTKDLQTRLEEINKRIDDATRRSGRKDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRVQELREKDEKLDGVEWHFIGH
LQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRKIPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEG
LMTIVPYSENPEEARPYFKQMNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGERVYN
>Mature_230_residues
MVTKDLQTRLEEINKRIDDATRRSGRKDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRVQELREKDEKLDGVEWHFIGH
LQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRKIPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEG
LMTIVPYSENPEEARPYFKQMNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGERVYN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=34.0336134453782, Blast_Score=124, Evalue=7e-29,
Organism=Escherichia coli, GI1789321, Length=239, Percent_Identity=32.6359832635983, Blast_Score=118, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=32.7800829875519, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=210, Percent_Identity=37.1428571428571, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI45550861, Length=249, Percent_Identity=32.1285140562249, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26942; Mature: 26942

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTKDLQTRLEEINKRIDDATRRSGRKDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEECHHHH
QELREKDEKLDGVEWHFIGHLQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRK
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCC
IPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEGLMTIVPYSENPEEARPYFKQ
CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEECEEEEEECCCCCHHHHHHHHHH
MNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGERVYN
HHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCEEEEEHHHHHHHHCCC
>Mature Secondary Structure
MVTKDLQTRLEEINKRIDDATRRSGRKDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEECHHHH
QELREKDEKLDGVEWHFIGHLQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRK
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCC
IPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEGLMTIVPYSENPEEARPYFKQ
CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEECEEEEEECCCCCHHHHHHHHHH
MNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGERVYN
HHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCEEEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]