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The map label for this gene is ylmD [H]

Identifier: 220931763

GI number: 220931763

Start: 992998

End: 993804

Strand: Direct

Name: ylmD [H]

Synonym: Hore_09200

Alternate gene names: 220931763

Gene position: 992998-993804 (Clockwise)

Preceding gene: 220931762

Following gene: 220931764

Centisome position: 38.52

GC content: 39.03

Gene sequence:

>807_bases
TTGTTTGTCTGGAATGGAGCCGGGCCCTTACAATACTTAGAAATTGAGGAATTTAAGGACAATGGGGTTACAGCTATTTT
TACAAGTAGGCGCGGTGGAGTTAGCAAAGGGAGTTATGGCACCCTTAATCTAGGATTTCACTCCGGTGATGACCACCAAA
ATGTTGTTGAAAATAGAAAGATTATTTCTTCTTCAATTAAAATAGATTACCATAACTTTGTAGCCGGGGAGCAAGTTCAC
GGTAATAAAGTATATATAGTTGCTGAAGAAGATAAAGGCAAGGGAGCCCTGGATTACAATACAAGCATAAGCGGGGTTGA
TGCCTTAATAACTGATAGGCCCGGGCTTCCTTTAATATCATTTTATGCCGATTGTGTTCCTCTTTACTTTTTAGCTCCTT
CCAGGAGAGTAATTGCCCTGGCTCATGCTGGCTGGAAAGGAACCTTATTAAAAATAGGGCAGAAAACGATAGAGAAAATG
AACCAGTATTTTGATATTAATATTAAAAACTGTCTGGCAGCAATTGGTCCTTCTATTTCACCCGATGTTTATGAAGTTGA
TGACAGGGTAGTGGGCAGGTTCAAAGAAAAATTTACTGAATGGCGAGATATTGTGGTAGATAAGGGGAAGGGATACTACC
TGTTGAACCTGTGGGAGGCCAACCGGATTGTTTTAAATAAGGCCGGTATACCTTCTAAAAATATAATTACCAGTGGCTAT
TGTACTTATAAATATGATAATTTCTTTTATTCATACAGGAGAGATGGGGCAAAGACTGGAAGAATGGCCAGCATTATTGT
AATCTAA

Upstream 100 bases:

>100_bases
GTCCGGTTTGCTTCTGTTTACCGCCAGTTTAAAGACGTAAATAAATTTAAGCAGGAGCTGGAGAGATTACTCCAGGAAGA
TTAAGGAGGGGGTTTATTCT

Downstream 100 bases:

>100_bases
AAAAGGACTTTTCAAATTTTTGGCGAATTTTAAATAAGGTGATTACCTGCTATGCCTGAAAAAATATATTACCTTGATCA
GAAAAAATATAAAAGAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MFVWNGAGPLQYLEIEEFKDNGVTAIFTSRRGGVSKGSYGTLNLGFHSGDDHQNVVENRKIISSSIKIDYHNFVAGEQVH
GNKVYIVAEEDKGKGALDYNTSISGVDALITDRPGLPLISFYADCVPLYFLAPSRRVIALAHAGWKGTLLKIGQKTIEKM
NQYFDINIKNCLAAIGPSISPDVYEVDDRVVGRFKEKFTEWRDIVVDKGKGYYLLNLWEANRIVLNKAGIPSKNIITSGY
CTYKYDNFFYSYRRDGAKTGRMASIIVI

Sequences:

>Translated_268_residues
MFVWNGAGPLQYLEIEEFKDNGVTAIFTSRRGGVSKGSYGTLNLGFHSGDDHQNVVENRKIISSSIKIDYHNFVAGEQVH
GNKVYIVAEEDKGKGALDYNTSISGVDALITDRPGLPLISFYADCVPLYFLAPSRRVIALAHAGWKGTLLKIGQKTIEKM
NQYFDINIKNCLAAIGPSISPDVYEVDDRVVGRFKEKFTEWRDIVVDKGKGYYLLNLWEANRIVLNKAGIPSKNIITSGY
CTYKYDNFFYSYRRDGAKTGRMASIIVI
>Mature_268_residues
MFVWNGAGPLQYLEIEEFKDNGVTAIFTSRRGGVSKGSYGTLNLGFHSGDDHQNVVENRKIISSSIKIDYHNFVAGEQVH
GNKVYIVAEEDKGKGALDYNTSISGVDALITDRPGLPLISFYADCVPLYFLAPSRRVIALAHAGWKGTLLKIGQKTIEKM
NQYFDINIKNCLAAIGPSISPDVYEVDDRVVGRFKEKFTEWRDIVVDKGKGYYLLNLWEANRIVLNKAGIPSKNIITSGY
CTYKYDNFFYSYRRDGAKTGRMASIIVI

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=249, Percent_Identity=24.0963855421687, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI190194372, Length=249, Percent_Identity=24.0963855421687, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1788945, Length=248, Percent_Identity=33.0645161290323, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 30005; Mature: 30005

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVWNGAGPLQYLEIEEFKDNGVTAIFTSRRGGVSKGSYGTLNLGFHSGDDHQNVVENRK
CEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
IISSSIKIDYHNFVAGEQVHGNKVYIVAEEDKGKGALDYNTSISGVDALITDRPGLPLIS
EEHHEEEEEEHHCCCCCEECCCEEEEEEECCCCCEEEECCCCCCCCEEEEECCCCCCHHH
FYADCVPLYFLAPSRRVIALAHAGWKGTLLKIGQKTIEKMNQYFDINIKNCLAAIGPSIS
HHHHHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCCC
PDVYEVDDRVVGRFKEKFTEWRDIVVDKGKGYYLLNLWEANRIVLNKAGIPSKNIITSGY
CCEEEHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCEEEEECCCCCCCCEEECCE
CTYKYDNFFYSYRRDGAKTGRMASIIVI
EEEEECCEEEEECCCCCCCCCEEEEEEC
>Mature Secondary Structure
MFVWNGAGPLQYLEIEEFKDNGVTAIFTSRRGGVSKGSYGTLNLGFHSGDDHQNVVENRK
CEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
IISSSIKIDYHNFVAGEQVHGNKVYIVAEEDKGKGALDYNTSISGVDALITDRPGLPLIS
EEHHEEEEEEHHCCCCCEECCCEEEEEEECCCCCEEEECCCCCCCCEEEEECCCCCCHHH
FYADCVPLYFLAPSRRVIALAHAGWKGTLLKIGQKTIEKMNQYFDINIKNCLAAIGPSIS
HHHHHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCCC
PDVYEVDDRVVGRFKEKFTEWRDIVVDKGKGYYLLNLWEANRIVLNKAGIPSKNIITSGY
CCEEEHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCEEEEECCCCCCCCEEECCE
CTYKYDNFFYSYRRDGAKTGRMASIIVI
EEEEECCEEEEECCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]