| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is spoVD [H]
Identifier: 220931746
GI number: 220931746
Start: 973876
End: 975963
Strand: Direct
Name: spoVD [H]
Synonym: Hore_09030
Alternate gene names: 220931746
Gene position: 973876-975963 (Clockwise)
Preceding gene: 220931745
Following gene: 220931747
Centisome position: 37.77
GC content: 41.71
Gene sequence:
>2088_bases ATGAACCTGCCCGGGTTAAAAATAAAAAAAAGAATAGTATTTTTGTTTATCATATTATTTTTACTTACTTTTTCTCTGGG GTTAAGACTGATCTGGATTCAGGTTATTAATAGTGAACATTATCAGGAAGAAGCCTTAAATCAGAGGTTGCGCCATTTAA AGGTTGAGCCCAAAAGGGGCACCATTTTTGACCGTAATGGGGGGAAACTGGCTGTTAGTGCCAGTAGTGAGACCGTAATG GCGATACCCCTAGAAGTTAAAGAACCCCGCCAAACTGCTCAAAAGCTCAGTAGAGTTCTTGATATGGAGCCTGAATATAT ATATAAACGACTCACGAAAAACGCCAGTGCTGTATATATAAAAAGAAAGGTAGATGAAAAAACAGCCAACCAGGTTAGAA AATTAAATCTTCCCGGCATTACTTTTACAGAGGAAAGCAAACGTTATTATCCCAAGGGAAGTCTCGCCTGTCATATCCTT GGCTTTGCCGGTATTGATAGTCAGGGGCTTGATGGTGTAGAATTATTTTATGACAGGTATTTAAGAGGGATACCTGGGAG AATTGAAGTAGAAAGAGATGCTTCGGGTCAGACTATCCCGGGAGGGATACAGGAGTATGTACCCCCTGAAAATGGATATA ATCTTTATCTGACGATAGATGAAGTAATCCAGTATATAGCTGAGCGGGAACTGGACAGAGCTTTAAAAGATTTTAGTATA TCTGGAGGCACTATAATTGTTATGGAACCGGAGACAGGTAGTATCCTGGCTCTGGCCAACCGGCCTGCTTATGACCCCAA CAATTTTGGAGATTTTCCTCAAAAATACTGGAGGAATCGTGCTATTTCAGATGGCTTTGAGCCCGGCTCTACCTTTAAAA TTATAACAACGGCTACAGCCCTCGAAGAGGGAGTTGTAAATGAAAATGACCGTTTTGTTGATCCCGGGTATATTATAGTC AGTGGTGAGAGGATAAAATGCTGGAAAGCAGGTGGCCATGGCAGTCAATCCTTTGCTGAGGTTGTAAAAAACTCATGCAA CCCTAGTTTTGTTCAGGTTGGAATGAGAATAGGTAAAGAAAGTTTTTATAACTATATTAACGCTTTCGGGTTTGGAAAAG ATACCGGTATAAAATTACCAGGTGAGGCTGAAGGGCTTTTGCCTGGATTTGATGACATCGGCCCGGTTGAACTGGCTACA ATGTCTTTTGGTCACGGGATAACTGTTACTCCCATTCAACTGGTAACTGCAGTTTCAGCAGTTGCCAATGACGGAATGTT AATGAAACCGAGGCTGGTAAAGGAAATCAGGACCCCTGATGGGGAGTTGGTTAAAGAGATTAAACCGGTCAGGGTCAGAC AGGTTATATCAGAGGAAACTGCCCGGAGAACTTTAAAATTACTGGAACAGGTCGTAGCTGATGGTACCGGAGTTCAGGCC CAGATAGATGGTTATAGAATAGGTGGTAAAACCGGTACAGCCAAACATTATGGGGTTCAGGTCTATGATTCTTCTTTTAT AGGTATAGTTCCGGTAGATAACCCGCGTTTTGTAATTCTGGTAGTTTTATATGATGTGACCGGGTTTCCCTATTATGGAG GCCAGACGGCGGCACCGCTTTTCAGAAATGTTGCCCTTGATGTTATTAGATACCTTGATATACCTCCCCAGTACTCCCCC CTCGATAAAAAACAAGAAGAGACTGAGGAGGTAGTTGTACCAGATATTATAGGGAAAAAGGCAATAAAAGCTGAAGAGGT ATTGAGAAAAGCCGGTCTAGATGTTAAACTAGTAGGTATGAAGGAAAAGGTACTACGACAGGTACCCCTACCAGGTGCCA GGGTAAAAGAGGGAACAACCGTTATTATATTTACAGAAGAAGGAGAAGGTATTGAGCAAAAATATAATGTAACCGTACCT GATTTAACTGGGATGACGGTTAATGAAGCATTAGACCTACTCTTTGAACTGGGGCTTAAAATGGATTATAATGGCAGTAA AGAAAGTTTAATTATTACCCAGGATATCGAGCCTGGCAGCAGGGTTCCAGGTGGCACCACTATAATAGTTGAAGTCAGTG ATGATTAA
Upstream 100 bases:
>100_bases TTCAGATAGAGATAAAATATTTTTTCTCCATTTTATTGATAAGATAATAGATAGAATTGGTACTGTTAAGGCTGGTTCCC GTAAGTAGGGAGGCTGGATC
Downstream 100 bases:
>100_bases ATTTAACCTGATGTGGTTAAAATAAATACGGGGGGAAGAACATTGAAAATATCGGAATTAATTAAAGATATAACACCAGT TGAAACCAGGGGAGACCTGG
Product: stage V sporulation protein D
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MNLPGLKIKKRIVFLFIILFLLTFSLGLRLIWIQVINSEHYQEEALNQRLRHLKVEPKRGTIFDRNGGKLAVSASSETVM AIPLEVKEPRQTAQKLSRVLDMEPEYIYKRLTKNASAVYIKRKVDEKTANQVRKLNLPGITFTEESKRYYPKGSLACHIL GFAGIDSQGLDGVELFYDRYLRGIPGRIEVERDASGQTIPGGIQEYVPPENGYNLYLTIDEVIQYIAERELDRALKDFSI SGGTIIVMEPETGSILALANRPAYDPNNFGDFPQKYWRNRAISDGFEPGSTFKIITTATALEEGVVNENDRFVDPGYIIV SGERIKCWKAGGHGSQSFAEVVKNSCNPSFVQVGMRIGKESFYNYINAFGFGKDTGIKLPGEAEGLLPGFDDIGPVELAT MSFGHGITVTPIQLVTAVSAVANDGMLMKPRLVKEIRTPDGELVKEIKPVRVRQVISEETARRTLKLLEQVVADGTGVQA QIDGYRIGGKTGTAKHYGVQVYDSSFIGIVPVDNPRFVILVVLYDVTGFPYYGGQTAAPLFRNVALDVIRYLDIPPQYSP LDKKQEETEEVVVPDIIGKKAIKAEEVLRKAGLDVKLVGMKEKVLRQVPLPGARVKEGTTVIIFTEEGEGIEQKYNVTVP DLTGMTVNEALDLLFELGLKMDYNGSKESLIITQDIEPGSRVPGGTTIIVEVSDD
Sequences:
>Translated_695_residues MNLPGLKIKKRIVFLFIILFLLTFSLGLRLIWIQVINSEHYQEEALNQRLRHLKVEPKRGTIFDRNGGKLAVSASSETVM AIPLEVKEPRQTAQKLSRVLDMEPEYIYKRLTKNASAVYIKRKVDEKTANQVRKLNLPGITFTEESKRYYPKGSLACHIL GFAGIDSQGLDGVELFYDRYLRGIPGRIEVERDASGQTIPGGIQEYVPPENGYNLYLTIDEVIQYIAERELDRALKDFSI SGGTIIVMEPETGSILALANRPAYDPNNFGDFPQKYWRNRAISDGFEPGSTFKIITTATALEEGVVNENDRFVDPGYIIV SGERIKCWKAGGHGSQSFAEVVKNSCNPSFVQVGMRIGKESFYNYINAFGFGKDTGIKLPGEAEGLLPGFDDIGPVELAT MSFGHGITVTPIQLVTAVSAVANDGMLMKPRLVKEIRTPDGELVKEIKPVRVRQVISEETARRTLKLLEQVVADGTGVQA QIDGYRIGGKTGTAKHYGVQVYDSSFIGIVPVDNPRFVILVVLYDVTGFPYYGGQTAAPLFRNVALDVIRYLDIPPQYSP LDKKQEETEEVVVPDIIGKKAIKAEEVLRKAGLDVKLVGMKEKVLRQVPLPGARVKEGTTVIIFTEEGEGIEQKYNVTVP DLTGMTVNEALDLLFELGLKMDYNGSKESLIITQDIEPGSRVPGGTTIIVEVSDD >Mature_695_residues MNLPGLKIKKRIVFLFIILFLLTFSLGLRLIWIQVINSEHYQEEALNQRLRHLKVEPKRGTIFDRNGGKLAVSASSETVM AIPLEVKEPRQTAQKLSRVLDMEPEYIYKRLTKNASAVYIKRKVDEKTANQVRKLNLPGITFTEESKRYYPKGSLACHIL GFAGIDSQGLDGVELFYDRYLRGIPGRIEVERDASGQTIPGGIQEYVPPENGYNLYLTIDEVIQYIAERELDRALKDFSI SGGTIIVMEPETGSILALANRPAYDPNNFGDFPQKYWRNRAISDGFEPGSTFKIITTATALEEGVVNENDRFVDPGYIIV SGERIKCWKAGGHGSQSFAEVVKNSCNPSFVQVGMRIGKESFYNYINAFGFGKDTGIKLPGEAEGLLPGFDDIGPVELAT MSFGHGITVTPIQLVTAVSAVANDGMLMKPRLVKEIRTPDGELVKEIKPVRVRQVISEETARRTLKLLEQVVADGTGVQA QIDGYRIGGKTGTAKHYGVQVYDSSFIGIVPVDNPRFVILVVLYDVTGFPYYGGQTAAPLFRNVALDVIRYLDIPPQYSP LDKKQEETEEVVVPDIIGKKAIKAEEVLRKAGLDVKLVGMKEKVLRQVPLPGARVKEGTTVIIFTEEGEGIEQKYNVTVP DLTGMTVNEALDLLFELGLKMDYNGSKESLIITQDIEPGSRVPGGTTIIVEVSDD
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=573, Percent_Identity=34.0314136125654, Blast_Score=303, Evalue=3e-83, Organism=Escherichia coli, GI1786854, Length=595, Percent_Identity=26.890756302521, Blast_Score=181, Evalue=1e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 76993; Mature: 76993
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLPGLKIKKRIVFLFIILFLLTFSLGLRLIWIQVINSEHYQEEALNQRLRHLKVEPKRG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC TIFDRNGGKLAVSASSETVMAIPLEVKEPRQTAQKLSRVLDMEPEYIYKRLTKNASAVYI EEEECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE KRKVDEKTANQVRKLNLPGITFTEESKRYYPKGSLACHILGFAGIDSQGLDGVELFYDRY EEHHCHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHH LRGIPGRIEVERDASGQTIPGGIQEYVPPENGYNLYLTIDEVIQYIAERELDRALKDFSI HHCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC SGGTIIVMEPETGSILALANRPAYDPNNFGDFPQKYWRNRAISDGFEPGSTFKIITTATA CCCEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEHHH LEEGVVNENDRFVDPGYIIVSGERIKCWKAGGHGSQSFAEVVKNSCNPSFVQVGMRIGKE HHHCCCCCCCCEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH SFYNYINAFGFGKDTGIKLPGEAEGLLPGFDDIGPVELATMSFGHGITVTPIQLVTAVSA HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHH VANDGMLMKPRLVKEIRTPDGELVKEIKPVRVRQVISEETARRTLKLLEQVVADGTGVQA HHCCCEEECCHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE QIDGYRIGGKTGTAKHYGVQVYDSSFIGIVPVDNPRFVILVVLYDVTGFPYYGGQTAAPL EECCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHH FRNVALDVIRYLDIPPQYSPLDKKQEETEEVVVPDIIGKKAIKAEEVLRKAGLDVKLVGM HHHHHHHHHHHHCCCCCCCCCCCCHHHHHCEECCHHHCHHHHHHHHHHHHCCCCEEEECC KEKVLRQVPLPGARVKEGTTVIIFTEEGEGIEQKYNVTVPDLTGMTVNEALDLLFELGLK HHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC MDYNGSKESLIITQDIEPGSRVPGGTTIIVEVSDD CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCC >Mature Secondary Structure MNLPGLKIKKRIVFLFIILFLLTFSLGLRLIWIQVINSEHYQEEALNQRLRHLKVEPKRG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC TIFDRNGGKLAVSASSETVMAIPLEVKEPRQTAQKLSRVLDMEPEYIYKRLTKNASAVYI EEEECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE KRKVDEKTANQVRKLNLPGITFTEESKRYYPKGSLACHILGFAGIDSQGLDGVELFYDRY EEHHCHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHH LRGIPGRIEVERDASGQTIPGGIQEYVPPENGYNLYLTIDEVIQYIAERELDRALKDFSI HHCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC SGGTIIVMEPETGSILALANRPAYDPNNFGDFPQKYWRNRAISDGFEPGSTFKIITTATA CCCEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEHHH LEEGVVNENDRFVDPGYIIVSGERIKCWKAGGHGSQSFAEVVKNSCNPSFVQVGMRIGKE HHHCCCCCCCCEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH SFYNYINAFGFGKDTGIKLPGEAEGLLPGFDDIGPVELATMSFGHGITVTPIQLVTAVSA HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHH VANDGMLMKPRLVKEIRTPDGELVKEIKPVRVRQVISEETARRTLKLLEQVVADGTGVQA HHCCCEEECCHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE QIDGYRIGGKTGTAKHYGVQVYDSSFIGIVPVDNPRFVILVVLYDVTGFPYYGGQTAAPL EECCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHH FRNVALDVIRYLDIPPQYSPLDKKQEETEEVVVPDIIGKKAIKAEEVLRKAGLDVKLVGM HHHHHHHHHHHHCCCCCCCCCCCCHHHHHCEECCHHHCHHHHHHHHHHHHCCCCEEEECC KEKVLRQVPLPGARVKEGTTVIIFTEEGEGIEQKYNVTVPDLTGMTVNEALDLLFELGLK HHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC MDYNGSKESLIITQDIEPGSRVPGGTTIIVEVSDD CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]