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The map label for this gene is yggB [C]

Identifier: 220931736

GI number: 220931736

Start: 965824

End: 966501

Strand: Direct

Name: yggB [C]

Synonym: Hore_08930

Alternate gene names: 220931736

Gene position: 965824-966501 (Clockwise)

Preceding gene: 220931735

Following gene: 220931737

Centisome position: 37.46

GC content: 34.81

Gene sequence:

>678_bases
ATGGAGTGGTTAGATAACTTTATTAATATAAATTCAGAATACAGAAACAAATTAATTTATACAGTTATTATTGTTACTGT
TATAGCAATTATAAGGTGGGGTATTAACAAAATAATTAGTTCAAAGGTTGATGATGTTGCTCTTAAATACAGATGGAGAA
AGGTATCAAATTATTTATCTTTTTTATCAGGAATAATATTTGTGTTACCCCTCTGGTTAAAAGGGTTTCAATCCCTGATG
ACTTTTCTGGGACTGTTTTCAGCTGGTCTGGCTATTGCCCTCAGAGATTTGCTTTCTAATCTTGTAGGGTGGTTATTTAT
AATCTGGAAGCGACCTTTTACCCTGGGAGACAGGATTCAAATTGGAGAGTACTCAGGTGATGTTATAGATATACGAATAT
TTCAGTTTTCTTTAGTTGAGATTGGTGAATGGGTACAGGCAGATCAGAGTACCGGAAGGGTATTACATATTCCCAATGGG
AAGGTATTAAATACCAGTGTGGCCAATTATACTGCCGGATTTGAGTATATATGGAACGAGATACCGGTGCTGGTAACCTT
TGAAAGCAACTGGGAGAAGGCCAGACAAATATTACTGGATATTGTGAGTAAATATGTTGAGGATACTGAAAATATTGTTC
GAAAAAAAAACTTAAACAGGCATCAAAAAAATACCTGA

Upstream 100 bases:

>100_bases
CCTCATCTTCGTAGAGCTGTTGATTTTTTAGAAGAACTCGAAAAAAAACAGGAAAAAGAAAAGTAAAATAGATGTTAACT
TTAATAAAGGTTGTGTTTAT

Downstream 100 bases:

>100_bases
TACAATATGGCAAATTGACTCCCATTGTGTATACCAATGTCAAAGATAGTGGGATTCTTTTGACTGTCAGGTATCTATGT
GAAGCAAGAAATAGAAGGAC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MEWLDNFININSEYRNKLIYTVIIVTVIAIIRWGINKIISSKVDDVALKYRWRKVSNYLSFLSGIIFVLPLWLKGFQSLM
TFLGLFSAGLAIALRDLLSNLVGWLFIIWKRPFTLGDRIQIGEYSGDVIDIRIFQFSLVEIGEWVQADQSTGRVLHIPNG
KVLNTSVANYTAGFEYIWNEIPVLVTFESNWEKARQILLDIVSKYVEDTENIVRKKNLNRHQKNT

Sequences:

>Translated_225_residues
MEWLDNFININSEYRNKLIYTVIIVTVIAIIRWGINKIISSKVDDVALKYRWRKVSNYLSFLSGIIFVLPLWLKGFQSLM
TFLGLFSAGLAIALRDLLSNLVGWLFIIWKRPFTLGDRIQIGEYSGDVIDIRIFQFSLVEIGEWVQADQSTGRVLHIPNG
KVLNTSVANYTAGFEYIWNEIPVLVTFESNWEKARQILLDIVSKYVEDTENIVRKKNLNRHQKNT
>Mature_225_residues
MEWLDNFININSEYRNKLIYTVIIVTVIAIIRWGINKIISSKVDDVALKYRWRKVSNYLSFLSGIIFVLPLWLKGFQSLM
TFLGLFSAGLAIALRDLLSNLVGWLFIIWKRPFTLGDRIQIGEYSGDVIDIRIFQFSLVEIGEWVQADQSTGRVLHIPNG
KVLNTSVANYTAGFEYIWNEIPVLVTFESNWEKARQILLDIVSKYVEDTENIVRKKNLNRHQKNT

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=221, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 26105; Mature: 26105

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWLDNFININSEYRNKLIYTVIIVTVIAIIRWGINKIISSKVDDVALKYRWRKVSNYLS
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSGIIFVLPLWLKGFQSLMTFLGLFSAGLAIALRDLLSNLVGWLFIIWKRPFTLGDRIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
IGEYSGDVIDIRIFQFSLVEIGEWVQADQSTGRVLHIPNGKVLNTSVANYTAGFEYIWNE
ECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECHHHHHHHHHHHHHCC
IPVLVTFESNWEKARQILLDIVSKYVEDTENIVRKKNLNRHQKNT
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEWLDNFININSEYRNKLIYTVIIVTVIAIIRWGINKIISSKVDDVALKYRWRKVSNYLS
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSGIIFVLPLWLKGFQSLMTFLGLFSAGLAIALRDLLSNLVGWLFIIWKRPFTLGDRIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
IGEYSGDVIDIRIFQFSLVEIGEWVQADQSTGRVLHIPNGKVLNTSVANYTAGFEYIWNE
ECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECHHHHHHHHHHHHHCC
IPVLVTFESNWEKARQILLDIVSKYVEDTENIVRKKNLNRHQKNT
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]