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The map label for this gene is deoB [H]

Identifier: 220931539

GI number: 220931539

Start: 754153

End: 755202

Strand: Direct

Name: deoB [H]

Synonym: Hore_06950

Alternate gene names: 220931539

Gene position: 754153-755202 (Clockwise)

Preceding gene: 220931538

Following gene: 220931540

Centisome position: 29.25

GC content: 41.52

Gene sequence:

>1050_bases
ATGAGTATTCCTAATATGGAAAGAATGGGGCTTGGTAAAATAAAGGATTTAGAAGGAATATCGTCTACTATCAAAGCCAG
GGGGGCCTACGGTAAAATGGCTGAGTCTTCAGCTGGCAAGGACACTACTACCGGACACTGGGAAATAGCCGGAATAATCC
TAAAAGAACCATTCCCTACATATCCTGATGGCTTTCCTCCCGAGGTTATAAAGCCCTTTGAAAGGGAGATTGGACGTGAA
GTCCTGGGAAATAAACCTGCTTCCGGGACCAAAATTATTGAAGAACTGGGAGAAGAACATATAAAAACAGGGAAACCCAT
TGTATATACTTCAGCCGATAGTGTTTTTCAGATTGCAGCCCACGAAGAGGTTATACCGGTTGAGGAACTTTATAATATGT
GTAAAATTGCCCGTCGTATTTTAACCGGGAAACATGCTGTTGGCCGGGTTATAGCTCGTCCTTTTATCGGAAAGCCTGGT
AATTTTGTCAGGACCGAAAGACGGGAAGATTTTTCCCTTGAACCACCTGAAAAAACCATGCTTGATATAATAAAAGAAGC
AGGTTTACAGGTATATGCTGTTGGTAAAATTGTTGATATATTTGCCGGTAGGGGAATTAATGAATATAATCACACTGTAG
ATAATATGGATAGTGTTGATGCGATTCTCGATTACATGGATGAGGTTTCCAGTGGACTTATTTTTGCCAATCTGGTTGAG
TTTGATATGGTGTATGGTCATCGCCGTAATGTGAAGGGCTATGCCCGGGCCCTTGAGGAGTTTGATCAGAGAATACCCGA
AATACTTGATAAATTAAAAAGTAATGATATTTTAATAATAACTGCTGATCATGGTTGTGACCCTGCCTATAAGGGGACAG
ACCATACCAGGGAGTATGTTCCCCTGTTAATATATGGGGAAAACATCAAGGAAGACTGTAACCTGGGGGTAAGGAGTAGC
TATAGTGACCTGGCAGCAACTATAACCGATTTGCTCGGGGTTCGTCAGGTAAACAATGGTGAAAGTTTTGCCGGGATTAT
TTTAAAGTGA

Upstream 100 bases:

>100_bases
AATTGTTCTTGATAGTGTGGGTATTGGTGCTCTTCCTGATGCCAGGAAATAAGGTGATGAAGGGGCTGATACCCTGGGAC
ATATCTGCAGTCAGGAAGGA

Downstream 100 bases:

>100_bases
AGAAGTTATTTCTGCCTGGTTAAAAATAGTTAATCCTGAAAAGCCGATAAAATTGAGTATTCAGGTTTTAATTTATTTTT
TAGTAACAAAACTAATATAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSIPNMERMGLGKIKDLEGISSTIKARGAYGKMAESSAGKDTTTGHWEIAGIILKEPFPTYPDGFPPEVIKPFEREIGRE
VLGNKPASGTKIIEELGEEHIKTGKPIVYTSADSVFQIAAHEEVIPVEELYNMCKIARRILTGKHAVGRVIARPFIGKPG
NFVRTERREDFSLEPPEKTMLDIIKEAGLQVYAVGKIVDIFAGRGINEYNHTVDNMDSVDAILDYMDEVSSGLIFANLVE
FDMVYGHRRNVKGYARALEEFDQRIPEILDKLKSNDILIITADHGCDPAYKGTDHTREYVPLLIYGENIKEDCNLGVRSS
YSDLAATITDLLGVRQVNNGESFAGIILK

Sequences:

>Translated_349_residues
MSIPNMERMGLGKIKDLEGISSTIKARGAYGKMAESSAGKDTTTGHWEIAGIILKEPFPTYPDGFPPEVIKPFEREIGRE
VLGNKPASGTKIIEELGEEHIKTGKPIVYTSADSVFQIAAHEEVIPVEELYNMCKIARRILTGKHAVGRVIARPFIGKPG
NFVRTERREDFSLEPPEKTMLDIIKEAGLQVYAVGKIVDIFAGRGINEYNHTVDNMDSVDAILDYMDEVSSGLIFANLVE
FDMVYGHRRNVKGYARALEEFDQRIPEILDKLKSNDILIITADHGCDPAYKGTDHTREYVPLLIYGENIKEDCNLGVRSS
YSDLAATITDLLGVRQVNNGESFAGIILK
>Mature_348_residues
SIPNMERMGLGKIKDLEGISSTIKARGAYGKMAESSAGKDTTTGHWEIAGIILKEPFPTYPDGFPPEVIKPFEREIGREV
LGNKPASGTKIIEELGEEHIKTGKPIVYTSADSVFQIAAHEEVIPVEELYNMCKIARRILTGKHAVGRVIARPFIGKPGN
FVRTERREDFSLEPPEKTMLDIIKEAGLQVYAVGKIVDIFAGRGINEYNHTVDNMDSVDAILDYMDEVSSGLIFANLVEF
DMVYGHRRNVKGYARALEEFDQRIPEILDKLKSNDILIITADHGCDPAYKGTDHTREYVPLLIYGENIKEDCNLGVRSSY
SDLAATITDLLGVRQVNNGESFAGIILK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=356, Percent_Identity=46.0674157303371, Blast_Score=300, Evalue=7e-83,
Organism=Escherichia coli, GI1789781, Length=174, Percent_Identity=31.0344827586207, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 38721; Mature: 38590

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPNMERMGLGKIKDLEGISSTIKARGAYGKMAESSAGKDTTTGHWEIAGIILKEPFPT
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEEEECCCCC
YPDGFPPEVIKPFEREIGREVLGNKPASGTKIIEELGEEHIKTGKPIVYTSADSVFQIAA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECC
HEEVIPVEELYNMCKIARRILTGKHAVGRVIARPFIGKPGNFVRTERREDFSLEPPEKTM
CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LDIIKEAGLQVYAVGKIVDIFAGRGINEYNHTVDNMDSVDAILDYMDEVSSGLIFANLVE
HHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
FDMVYGHRRNVKGYARALEEFDQRIPEILDKLKSNDILIITADHGCDPAYKGTDHTREYV
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCE
PLLIYGENIKEDCNLGVRSSYSDLAATITDLLGVRQVNNGESFAGIILK
EEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
>Mature Secondary Structure 
SIPNMERMGLGKIKDLEGISSTIKARGAYGKMAESSAGKDTTTGHWEIAGIILKEPFPT
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEEEECCCCC
YPDGFPPEVIKPFEREIGREVLGNKPASGTKIIEELGEEHIKTGKPIVYTSADSVFQIAA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECC
HEEVIPVEELYNMCKIARRILTGKHAVGRVIARPFIGKPGNFVRTERREDFSLEPPEKTM
CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LDIIKEAGLQVYAVGKIVDIFAGRGINEYNHTVDNMDSVDAILDYMDEVSSGLIFANLVE
HHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
FDMVYGHRRNVKGYARALEEFDQRIPEILDKLKSNDILIITADHGCDPAYKGTDHTREYV
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCE
PLLIYGENIKEDCNLGVRSSYSDLAATITDLLGVRQVNNGESFAGIILK
EEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA