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The map label for this gene is ycbB [H]

Identifier: 220931487

GI number: 220931487

Start: 696953

End: 698596

Strand: Direct

Name: ycbB [H]

Synonym: Hore_06430

Alternate gene names: 220931487

Gene position: 696953-698596 (Clockwise)

Preceding gene: 220931486

Following gene: 220931489

Centisome position: 27.03

GC content: 35.1

Gene sequence:

>1644_bases
ATGAAAAAAATAGTTATTATTTTTGTATTTAGTTTATTGTTAGTAATATTAAATAATAGTCTGGTTATCAGGGCATATAC
TACACCATCACCAGAATTACAAACTATCCAGCTGAAAAGTCGCTCTATTGAGTATGAAAGTAGTGGAAAGTTATTATCGG
AATTGATAAAACTGTTTTATGAAGAACGAAACTATAATCCTGCCTGGTGTAGTCAGACAGAGATCTATCCCCAGGCCTAC
ATATTATTAAAAATAATAAAAGAGGCTGACCGGGAAGGCCTTGACCCCTCGGCCTATTATTATTCCCTGATTTCAAATTA
TGTCAGGGAACTGGAAAATAAGATTATAAGAAATAGTAGTATTACCAGGGAAGTTGCGCTCAGCTTTGAATTGTTAATGA
CAAAAGTTTATCTAGATTATACCCTTGATTTATTGACAGGTTATACCAGAAACGGAATGTTTAATAAAATGTATGATAAA
CACGAGCTTATTAAGAAGTTAAACAGAGCGATAGAACAAGAAAGCCTGGGGAAATTTTTTATTGATTTATATCCCGGTCA
GGAGCTGTATTTCAGAATGAGAAAGGCCTTATCCCACCTGAGAAATATATCATCTAAAGACTGGCCCAGAGTAGGTTATG
GCCCCCCATTACAGCGCGGTGACTATAGTAAGAGAATCATTGAACTCAGGAGACGGCTTTATTTGTCTGGAGACCTGTCT
GAGGAACAATTAAATACAGGTACCTATTTTGACAGGGAACTGGAAAAAGCAGTCAGGAAATTTCAAAGGAGGCATGGGTT
AAAAGATAGTGGAATCGTTGATGATAAAACAATTGAGGCCCTGAATATTCCCGTAAAAGAAAAGATAAATAAAATTATAA
TAAATATGGAGAGACTAAGATGGCTTCCCAGGGATAATCCTGACCTGTGTGTAATGGTAAATATTCCAGAATATAAGCTA
AAGGTTATTAGGGAAGATAAGGTTATCCTTGAATCTAAAGTTATTGTAGGAAGTAGAGAAAATCAGACTCCATCCTTTAA
TGACAGTATTGAGTATATTGTTTTAAATCCTTACTGGTATATACCAGATAATATTACCAGATATGAATTGTTACCTCAAA
TAAAAAAAGACCCGGATTATCTGGACAAACATAATATTCAGATTTTAAGTGGTTTTGAAGGAGAAGTAAAAATTATACCA
GAAGACCAGATAAACTGGGATGAGGTAACACCTGAAAACTTTAGTTATAAATTACGTCAGAAACCAGGCCCGGGTAATTC
CCTGGGTAGTATTAAATTTTTGTTTCCCAATGATTTCAATGTATATTTACATGACACTCCATCCAGGGGATTATTTGAAT
ACAGGGAACGGGCTTTAAGTCATGGATGTATCAGGGTGGAAAGACCTCTGGAGCTGGCGAAAGTTCTTATAAGCCAGAGC
AACTGGAGTTATAATGAAGTAATTAGTATAATAAATAGTGGTAACAGGGAGGTTATTGAACTAAAAAACCCTGTTCCAAT
CTATTTAATATATTTGACTGTCTGGGTTGATGATGATGGTGTAATACATTACCGGGAAGATATTTACCAGCGTGATAAAA
AACTTGTTCATGAAATGATGAAAAAGGCTGTTAACGATTCATAG

Upstream 100 bases:

>100_bases
TTTAACTTATAATATTCCCCCTGTTAGTTGAATATATTATCAATAGCCCAATGAAATTAATAGGATAACATAAAGATATA
CAACACGGGGGAATTGAAAT

Downstream 100 bases:

>100_bases
TTAACAGCCTTTCCAGGTTAGATTTCAATTAATTACTGGTATAGTTTGATGAACACAGGAACTGTTCGGCGTGCATGATT
CCTTCATGTTTCATTTATTA

Product: Peptidoglycan-binding domain 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MKKIVIIFVFSLLLVILNNSLVIRAYTTPSPELQTIQLKSRSIEYESSGKLLSELIKLFYEERNYNPAWCSQTEIYPQAY
ILLKIIKEADREGLDPSAYYYSLISNYVRELENKIIRNSSITREVALSFELLMTKVYLDYTLDLLTGYTRNGMFNKMYDK
HELIKKLNRAIEQESLGKFFIDLYPGQELYFRMRKALSHLRNISSKDWPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLS
EEQLNTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLRWLPRDNPDLCVMVNIPEYKL
KVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWYIPDNITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIP
EDQINWDEVTPENFSYKLRQKPGPGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLELAKVLISQS
NWSYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRDKKLVHEMMKKAVNDS

Sequences:

>Translated_547_residues
MKKIVIIFVFSLLLVILNNSLVIRAYTTPSPELQTIQLKSRSIEYESSGKLLSELIKLFYEERNYNPAWCSQTEIYPQAY
ILLKIIKEADREGLDPSAYYYSLISNYVRELENKIIRNSSITREVALSFELLMTKVYLDYTLDLLTGYTRNGMFNKMYDK
HELIKKLNRAIEQESLGKFFIDLYPGQELYFRMRKALSHLRNISSKDWPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLS
EEQLNTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLRWLPRDNPDLCVMVNIPEYKL
KVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWYIPDNITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIP
EDQINWDEVTPENFSYKLRQKPGPGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLELAKVLISQS
NWSYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRDKKLVHEMMKKAVNDS
>Mature_547_residues
MKKIVIIFVFSLLLVILNNSLVIRAYTTPSPELQTIQLKSRSIEYESSGKLLSELIKLFYEERNYNPAWCSQTEIYPQAY
ILLKIIKEADREGLDPSAYYYSLISNYVRELENKIIRNSSITREVALSFELLMTKVYLDYTLDLLTGYTRNGMFNKMYDK
HELIKKLNRAIEQESLGKFFIDLYPGQELYFRMRKALSHLRNISSKDWPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLS
EEQLNTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLRWLPRDNPDLCVMVNIPEYKL
KVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWYIPDNITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIP
EDQINWDEVTPENFSYKLRQKPGPGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLELAKVLISQS
NWSYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRDKKLVHEMMKKAVNDS

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=522, Percent_Identity=27.3946360153257, Blast_Score=220, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 64360; Mature: 64360

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVIIFVFSLLLVILNNSLVIRAYTTPSPELQTIQLKSRSIEYESSGKLLSELIKLFY
CCEEEHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
EERNYNPAWCSQTEIYPQAYILLKIIKEADREGLDPSAYYYSLISNYVRELENKIIRNSS
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
ITREVALSFELLMTKVYLDYTLDLLTGYTRNGMFNKMYDKHELIKKLNRAIEQESLGKFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
IDLYPGQELYFRMRKALSHLRNISSKDWPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLS
EEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
EEQLNTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLR
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCHHHHHHHHHHHHHHHH
WLPRDNPDLCVMVNIPEYKLKVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWY
CCCCCCCCEEEEEECCHHEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEECCEEE
IPDNITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIPEDQINWDEVTPENFSYKLRQ
CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEC
KPGPGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLELAKVLISQS
CCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHCC
NWSYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRDKKLVHEMM
CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHH
KKAVNDS
HHHCCCC
>Mature Secondary Structure
MKKIVIIFVFSLLLVILNNSLVIRAYTTPSPELQTIQLKSRSIEYESSGKLLSELIKLFY
CCEEEHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
EERNYNPAWCSQTEIYPQAYILLKIIKEADREGLDPSAYYYSLISNYVRELENKIIRNSS
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
ITREVALSFELLMTKVYLDYTLDLLTGYTRNGMFNKMYDKHELIKKLNRAIEQESLGKFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
IDLYPGQELYFRMRKALSHLRNISSKDWPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLS
EEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
EEQLNTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLR
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCHHHHHHHHHHHHHHHH
WLPRDNPDLCVMVNIPEYKLKVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWY
CCCCCCCCEEEEEECCHHEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEECCEEE
IPDNITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIPEDQINWDEVTPENFSYKLRQ
CCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEC
KPGPGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLELAKVLISQS
CCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHCC
NWSYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRDKKLVHEMM
CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHH
KKAVNDS
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]