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The map label for this gene is lytR [H]

Identifier: 220931397

GI number: 220931397

Start: 603492

End: 604250

Strand: Direct

Name: lytR [H]

Synonym: Hore_05530

Alternate gene names: 220931397

Gene position: 603492-604250 (Clockwise)

Preceding gene: 220931395

Following gene: 220931399

Centisome position: 23.41

GC content: 32.02

Gene sequence:

>759_bases
ATGAAAAAACGCTTATTAATCTGGGTAGGGCTGGTAACAGGCATTTTTTTAATTGGAATAGGACTGTATTTCCATTACTC
ACAACCTGATGTAGTCCCTGGATTAGCTGATATAAATAACAGAGTTAAAAAAAGTAATATTTTATTAATGGGTCTTGATG
ACAAAAATAGTGTGGAAAAGGGAAAAGTAGAGGTAGATTCAATTGTTTTAGCCAGATTAGCACCTGAAAAACGGACCCTT
AAATTTACCAGTATTCCTGTTGAAGGGGAAATTTATAAGGGCCATGAGACAGTTGAAGAGATTATTGGCGAGGTGGAAAA
ACTTACCGGTGAAACTATAAACTACTATCTTACAGTCAGTTATGATGCTTTTATAAACATGGTAGATAGTATCGGGGGTA
TACAAATAAAGGTAGATAAGGCAATAGATATACCAGCTCTTGATTTATATCTGAAAAAAGGACTTAACAGGCTTACTGGA
CAGGAGGCTTTGAATTATTCTCGTTGGTTTAATTATAATACTAAAAGTGAAATTGAGAGATTAAAGAGGCAGCAACAGGT
AATTAAATCACTGGTCCATAAGATCTTAAAACCAGAGACCCTATTAAAACTTCCAGAACTATTCACAAATACCCTTAAAT
CTTTTGATAGGGTTGAGACCAATATAGATATATCTATCATTAATAAAGGCATAGATTTTTTAAAAAATAGGAATGATATT
ATAATTAAGTTTGATGTTTTTGATAAAAATATTAAGTAA

Upstream 100 bases:

>100_bases
TTTATTCTGTCAATACAATATTAAAAAATATATTAATTATTAAAGGAAACATTAATTTTATATAGAATTATTAAAATAAT
CCATTACAGGAGGTAAATCA

Downstream 100 bases:

>100_bases
ATAAGTTATTAGGTATTACAAATAGAAAACCAGTAACATTGTGATTAACGTAGAAAAAAAGACTATTAGTGAGATATAAA
GAGATATATGGTTATTAACT

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKKRLLIWVGLVTGIFLIGIGLYFHYSQPDVVPGLADINNRVKKSNILLMGLDDKNSVEKGKVEVDSIVLARLAPEKRTL
KFTSIPVEGEIYKGHETVEEIIGEVEKLTGETINYYLTVSYDAFINMVDSIGGIQIKVDKAIDIPALDLYLKKGLNRLTG
QEALNYSRWFNYNTKSEIERLKRQQQVIKSLVHKILKPETLLKLPELFTNTLKSFDRVETNIDISIINKGIDFLKNRNDI
IIKFDVFDKNIK

Sequences:

>Translated_252_residues
MKKRLLIWVGLVTGIFLIGIGLYFHYSQPDVVPGLADINNRVKKSNILLMGLDDKNSVEKGKVEVDSIVLARLAPEKRTL
KFTSIPVEGEIYKGHETVEEIIGEVEKLTGETINYYLTVSYDAFINMVDSIGGIQIKVDKAIDIPALDLYLKKGLNRLTG
QEALNYSRWFNYNTKSEIERLKRQQQVIKSLVHKILKPETLLKLPELFTNTLKSFDRVETNIDISIINKGIDFLKNRNDI
IIKFDVFDKNIK
>Mature_252_residues
MKKRLLIWVGLVTGIFLIGIGLYFHYSQPDVVPGLADINNRVKKSNILLMGLDDKNSVEKGKVEVDSIVLARLAPEKRTL
KFTSIPVEGEIYKGHETVEEIIGEVEKLTGETINYYLTVSYDAFINMVDSIGGIQIKVDKAIDIPALDLYLKKGLNRLTG
QEALNYSRWFNYNTKSEIERLKRQQQVIKSLVHKILKPETLLKLPELFTNTLKSFDRVETNIDISIINKGIDFLKNRNDI
IIKFDVFDKNIK

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 28799; Mature: 28799

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRLLIWVGLVTGIFLIGIGLYFHYSQPDVVPGLADINNRVKKSNILLMGLDDKNSVEK
CCCEEEEHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCC
GKVEVDSIVLARLAPEKRTLKFTSIPVEGEIYKGHETVEEIIGEVEKLTGETINYYLTVS
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEE
YDAFINMVDSIGGIQIKVDKAIDIPALDLYLKKGLNRLTGQEALNYSRWFNYNTKSEIER
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LKRQQQVIKSLVHKILKPETLLKLPELFTNTLKSFDRVETNIDISIINKGIDFLKNRNDI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCE
IIKFDVFDKNIK
EEEEEECCCCCC
>Mature Secondary Structure
MKKRLLIWVGLVTGIFLIGIGLYFHYSQPDVVPGLADINNRVKKSNILLMGLDDKNSVEK
CCCEEEEHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCC
GKVEVDSIVLARLAPEKRTLKFTSIPVEGEIYKGHETVEEIIGEVEKLTGETINYYLTVS
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEE
YDAFINMVDSIGGIQIKVDKAIDIPALDLYLKKGLNRLTGQEALNYSRWFNYNTKSEIER
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LKRQQQVIKSLVHKILKPETLLKLPELFTNTLKSFDRVETNIDISIINKGIDFLKNRNDI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCE
IIKFDVFDKNIK
EEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA