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The map label for this gene is citD

Identifier: 220931312

GI number: 220931312

Start: 500800

End: 501084

Strand: Direct

Name: citD

Synonym: Hore_04670

Alternate gene names: 220931312

Gene position: 500800-501084 (Clockwise)

Preceding gene: 220931311

Following gene: 220931313

Centisome position: 19.42

GC content: 36.84

Gene sequence:

>285_bases
ATGGAAATTAAGAGAACTGCAAGTGCCGGAACAATGGAATCATCAGATATAATGATAACTGTAAAACCGTCAAATAATGG
TATAAAAATTGAACTTAAAAGTGATGTAGAAAAACAATTTGGGAATCAGGTCAAAAAAATTATTAAAAATACTATAGAGG
GGATGGGGGTAAAAAATGTGTATATTCGTGCTCAGGATAGAGGAGCACTGGATTATGCAATAAAGGCAAGAACCAGGACA
GCCCTGGAGAGGGCCAGCAAGGGGGCTGAAGAGATTGAAAAATAA

Upstream 100 bases:

>100_bases
GTAAGGGATCTGGTACCAGAGGTAACCTATAAATTTTTACAGAGTCCTGGAGCCCAAAAAATTGTTGATTACCTCCAAAA
TAAGTTCAGGGGGGATAAAA

Downstream 100 bases:

>100_bases
ATTAAGAAGAAGTATGCTCTATATTCCGGCCAATAATCCAGGTATGATCCAGGATGCTTTCATTTATGGTGCAGATGCTA
TATTGTTTGATCTTGAGGAC

Product: Citrate (pro-3S)-lyase subunit beta

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MEIKRTASAGTMESSDIMITVKPSNNGIKIELKSDVEKQFGNQVKKIIKNTIEGMGVKNVYIRAQDRGALDYAIKARTRT
ALERASKGAEEIEK

Sequences:

>Translated_94_residues
MEIKRTASAGTMESSDIMITVKPSNNGIKIELKSDVEKQFGNQVKKIIKNTIEGMGVKNVYIRAQDRGALDYAIKARTRT
ALERASKGAEEIEK
>Mature_94_residues
MEIKRTASAGTMESSDIMITVKPSNNGIKIELKSDVEKQFGNQVKKIIKNTIEGMGVKNVYIRAQDRGALDYAIKARTRT
ALERASKGAEEIEK

Specific function: Covalent carrier of the coenzyme of citrate lyase

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family

Homologues:

Organism=Escherichia coli, GI1786834, Length=87, Percent_Identity=39.0804597701149, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CITD_HALOH (B8D1Z8)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002508220.1
- GeneID:   7314446
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_04670
- HOGENOM:   HBG359308
- OMA:   ESSDIMI
- GO:   GO:0005737
- HAMAP:   MF_00805
- InterPro:   IPR006495
- InterPro:   IPR009662
- PIRSF:   PIRSF002736
- ProDom:   PD015389
- TIGRFAMs:   TIGR01608

Pfam domain/function: PF06857 MdcD

EC number: 4.1.3.6

Molecular weight: Translated: 10414; Mature: 10414

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKRTASAGTMESSDIMITVKPSNNGIKIELKSDVEKQFGNQVKKIIKNTIEGMGVKNV
CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEE
YIRAQDRGALDYAIKARTRTALERASKGAEEIEK
EEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MEIKRTASAGTMESSDIMITVKPSNNGIKIELKSDVEKQFGNQVKKIIKNTIEGMGVKNV
CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEE
YIRAQDRGALDYAIKARTRTALERASKGAEEIEK
EEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA