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The map label for this gene is hypD2 [H]

Identifier: 220931237

GI number: 220931237

Start: 402139

End: 403236

Strand: Direct

Name: hypD2 [H]

Synonym: Hore_03910

Alternate gene names: 220931237

Gene position: 402139-403236 (Clockwise)

Preceding gene: 220931236

Following gene: 220931238

Centisome position: 15.6

GC content: 37.7

Gene sequence:

>1098_bases
ATGAAATGTGTTGATGAGTTGTCAGATAGGAAAATAATCAGCGGAATAGTCAGTAAAATTAAGGCAATTAAACTATCGGG
AAAAGTAAAAATTATGGAAGTATGTGGGACTCATACTATGTCAATTTTTAAAAACGGGATTAAAAGTTTATTACCAGACA
GTATTGAATTAATATCAGGTCCTGGTTGCCCTGTATGTGTAACCCCTGATATATATATTGACAAGGCCCTGGCCCTGGCA
AAAAAAGAGAATGTAATTATTACTACTTTTGCTGATCTTTTAAGGGTTCCAGGGTCTTCTGGAACACTGCAGGAAATGAG
AGTTAACAGAAAAAATATAACTACAGTTTATTCTCCCCTTGAAGCTGTAAAGATTGCATATAATAACCCCGGGCAGGAGG
TTATTTTTCTGGCTATTGGTTTTGAAACTACCATACCTGCTATTGCACTAAGTATTATAAAAGCCAACCAACTGGGACTC
AATAATTTTTCTATCTTACAATCACTTAAAATAATGCCTCCAGTATTACAGGAACTGGTTTTAGATAAAGATTTAGATGT
AGATGGTTTTATTTTACCTGGGCATGTAAGTACAATTTCTGGTTTGCAGCCCTTTGAGTTTTTAGCCAGGGATTACCATG
TTCCCGGGGTAGTGGCAGGTTTTGAGCCAGGTGATATTATTTTGTCAATATATACTCTGTGTAAAATGTTAAAAGATAAT
GATATCAGGGTAAAAAATCTGTATCCCAGGCTGGTAAGGCTTGAGGGAAACAAAAAAGCACAGGAGCTTATTAAAGAAAT
TTTTACACCAGTGGATAGTTACTGGCGTGGTCTGGGTACCATTACAGGCTCTGGATTGAAACTCAGGAAAGTTTATCATA
GATATTCTGCCGAAAAAAAGTTTCAGTTTGGGGATACTCAATATAGGCCTGGAAAAGGGTGTATCTGTGGAGAAATATTA
AAAGGCAAACAGAAACCAACTGACTGCAGATTGTTCGGCATCAAATGTACCCCGATGAAACCAGAAGGGCCGTGTATGGT
TTCCCGGGAAGGGACCTGTGCTGCATATTATCGATATCGGGGGAAGGTGAATTTATAA

Upstream 100 bases:

>100_bases
GGGTGTGCTATTCAGGTAGTGAATAAAAAAGAGGCAATAAGAACTTTAAAATTATTGAAAGAACTAAGCCAGGGGTAATT
ACAGGGGAAGGTTGATTTCA

Downstream 100 bases:

>100_bases
AAAAATGAATACTATATCCCTGGCCCATGGTAATGGCGGTAAAATGATGGAAGATTTGATAGATAATCTTTTTTTGAAAT
ATTTAAATAATGATATTATT

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MKCVDELSDRKIISGIVSKIKAIKLSGKVKIMEVCGTHTMSIFKNGIKSLLPDSIELISGPGCPVCVTPDIYIDKALALA
KKENVIITTFADLLRVPGSSGTLQEMRVNRKNITTVYSPLEAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGL
NNFSILQSLKIMPPVLQELVLDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLCKMLKDN
DIRVKNLYPRLVRLEGNKKAQELIKEIFTPVDSYWRGLGTITGSGLKLRKVYHRYSAEKKFQFGDTQYRPGKGCICGEIL
KGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTCAAYYRYRGKVNL

Sequences:

>Translated_365_residues
MKCVDELSDRKIISGIVSKIKAIKLSGKVKIMEVCGTHTMSIFKNGIKSLLPDSIELISGPGCPVCVTPDIYIDKALALA
KKENVIITTFADLLRVPGSSGTLQEMRVNRKNITTVYSPLEAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGL
NNFSILQSLKIMPPVLQELVLDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLCKMLKDN
DIRVKNLYPRLVRLEGNKKAQELIKEIFTPVDSYWRGLGTITGSGLKLRKVYHRYSAEKKFQFGDTQYRPGKGCICGEIL
KGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTCAAYYRYRGKVNL
>Mature_365_residues
MKCVDELSDRKIISGIVSKIKAIKLSGKVKIMEVCGTHTMSIFKNGIKSLLPDSIELISGPGCPVCVTPDIYIDKALALA
KKENVIITTFADLLRVPGSSGTLQEMRVNRKNITTVYSPLEAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGL
NNFSILQSLKIMPPVLQELVLDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLCKMLKDN
DIRVKNLYPRLVRLEGNKKAQELIKEIFTPVDSYWRGLGTITGSGLKLRKVYHRYSAEKKFQFGDTQYRPGKGCICGEIL
KGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTCAAYYRYRGKVNL

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=369, Percent_Identity=40.1084010840108, Blast_Score=282, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40379; Mature: 40379

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCVDELSDRKIISGIVSKIKAIKLSGKVKIMEVCGTHTMSIFKNGIKSLLPDSIELISG
CCCHHHHHHHHHHHHHHHHHHEEEECCCEEEEEHHCCHHHHHHHHHHHHHCCCCCCEECC
PGCPVCVTPDIYIDKALALAKKENVIITTFADLLRVPGSSGTLQEMRVNRKNITTVYSPL
CCCCEEECCCHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCHHHHHCCCCCCHHHCCCH
EAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGLNNFSILQSLKIMPPVLQELV
HHEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
LDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLCKMLKDN
HCCCCCCCCEEECCCHHHHCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
DIRVKNLYPRLVRLEGNKKAQELIKEIFTPVDSYWRGLGTITGSGLKLRKVYHRYSAEKK
CEEEEECCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
FQFGDTQYRPGKGCICGEILKGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTCAAYYRYR
EECCCCCCCCCCCCEEHHHHCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEEEEEEC
GKVNL
CCCCC
>Mature Secondary Structure
MKCVDELSDRKIISGIVSKIKAIKLSGKVKIMEVCGTHTMSIFKNGIKSLLPDSIELISG
CCCHHHHHHHHHHHHHHHHHHEEEECCCEEEEEHHCCHHHHHHHHHHHHHCCCCCCEECC
PGCPVCVTPDIYIDKALALAKKENVIITTFADLLRVPGSSGTLQEMRVNRKNITTVYSPL
CCCCEEECCCHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCHHHHHCCCCCCHHHCCCH
EAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGLNNFSILQSLKIMPPVLQELV
HHEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
LDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLCKMLKDN
HCCCCCCCCEEECCCHHHHCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
DIRVKNLYPRLVRLEGNKKAQELIKEIFTPVDSYWRGLGTITGSGLKLRKVYHRYSAEKK
CEEEEECCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
FQFGDTQYRPGKGCICGEILKGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTCAAYYRYR
EECCCCCCCCCCCCEEHHHHCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCEEEEEEEC
GKVNL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]