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The map label for this gene is 220931188

Identifier: 220931188

GI number: 220931188

Start: 353925

End: 354746

Strand: Direct

Name: 220931188

Synonym: Hore_03400

Alternate gene names: NA

Gene position: 353925-354746 (Clockwise)

Preceding gene: 220931187

Following gene: 220931192

Centisome position: 13.73

GC content: 37.23

Gene sequence:

>822_bases
ATGAGAACTATCTGGAAGGGTGCCATTAGTTTCGGACTTGTAAATATCCCCATTAAACTGGTTACGGCTACCACCAAAAA
GAATATCAGATTCCGTTTTCTCCATAAAGAATGTAAAACTCCGGTCAGCACTAAAAGGTTTTGTCCTACCTGCAAAAAAG
AAGTGGAATACGGGGATCTGGTCAAAGGCTATGAATATGAAGATAATAAATTTGTTGTTTTAAAGGATGAAGATTTTGAT
AATATTCCGGTAAAGTCTACCAAAACTATTGACATTGTTGATTTTGTTAAACTGGAAGATATTGATCCTGTTTACTATAT
AAAAACCTATTATTTGAACCCGGCCGAAGGGGGAGAAAAACCTTATTTGTTATTAAAAAAAGCCATGGATGATACCGGCA
AAGTAGCCATTAGTAAAATAACTATCAGAAAAAAAGAAAGTCTGGCCGTGATCCGGGTTATGGATGACGTTCTGGCTTTG
GAGACAATGTTTTTTGCTGATGAAGTCAGGCCAGCTTCAGAGCTGGGACTTAATAATATTGAAGAGAAGATAAAAATAGG
CAAAAAAGAGGAAGAACTGGCTGTTGAAATTGTTAATAACCTTACTACCGAGTTTAAGCCGGAAAAATACACCAATGAAT
ACCGGGAAGAACTGATGAACATAATTAGACAGAAAATTGAAGGTAAAGAGGTCGAAACACCGGATGTTGTTCCTGAAGAA
AGGAAGATTGTTGACCTTATGGAAAAACTAAAGAAAAGTGTTGAGGCCACCGAAGAGGGAGAAGGAAAGAAAAAGAAGAA
GACCAAGAAAAAGACCGGGTAG

Upstream 100 bases:

>100_bases
TAGATATTCTGGAAACTATACCCTTTTTAAAGTTAGAGGCAGATTCCAAAACGTCAATACTAAATACCAGGGTGACAAAA
TAACAGGGAAGGGTGTTAAT

Downstream 100 bases:

>100_bases
TTCCTGGCGTATTTTTAAAAGGGTTTCCCAGATGTTACCCTTCTGTTTGATTCTAGTTTCAATATTTTTAATATTGTAAT
TATCTGGATTGAGATCCGGG

Product: Ku family containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRTIWKGAISFGLVNIPIKLVTATTKKNIRFRFLHKECKTPVSTKRFCPTCKKEVEYGDLVKGYEYEDNKFVVLKDEDFD
NIPVKSTKTIDIVDFVKLEDIDPVYYIKTYYLNPAEGGEKPYLLLKKAMDDTGKVAISKITIRKKESLAVIRVMDDVLAL
ETMFFADEVRPASELGLNNIEEKIKIGKKEEELAVEIVNNLTTEFKPEKYTNEYREELMNIIRQKIEGKEVETPDVVPEE
RKIVDLMEKLKKSVEATEEGEGKKKKKTKKKTG

Sequences:

>Translated_273_residues
MRTIWKGAISFGLVNIPIKLVTATTKKNIRFRFLHKECKTPVSTKRFCPTCKKEVEYGDLVKGYEYEDNKFVVLKDEDFD
NIPVKSTKTIDIVDFVKLEDIDPVYYIKTYYLNPAEGGEKPYLLLKKAMDDTGKVAISKITIRKKESLAVIRVMDDVLAL
ETMFFADEVRPASELGLNNIEEKIKIGKKEEELAVEIVNNLTTEFKPEKYTNEYREELMNIIRQKIEGKEVETPDVVPEE
RKIVDLMEKLKKSVEATEEGEGKKKKKTKKKTG
>Mature_273_residues
MRTIWKGAISFGLVNIPIKLVTATTKKNIRFRFLHKECKTPVSTKRFCPTCKKEVEYGDLVKGYEYEDNKFVVLKDEDFD
NIPVKSTKTIDIVDFVKLEDIDPVYYIKTYYLNPAEGGEKPYLLLKKAMDDTGKVAISKITIRKKESLAVIRVMDDVLAL
ETMFFADEVRPASELGLNNIEEKIKIGKKEEELAVEIVNNLTTEFKPEKYTNEYREELMNIIRQKIEGKEVETPDVVPEE
RKIVDLMEKLKKSVEATEEGEGKKKKKTKKKTG

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 31486; Mature: 31486

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIWKGAISFGLVNIPIKLVTATTKKNIRFRFLHKECKTPVSTKRFCPTCKKEVEYGDL
CCCHHHHHHHHCEEECCEEEEEEECCCCCEEEEEHHHHCCCCCCHHCCCHHHHHCCCCCC
VKGYEYEDNKFVVLKDEDFDNIPVKSTKTIDIVDFVKLEDIDPVYYIKTYYLNPAEGGEK
CCCEEECCCEEEEEECCCCCCCCCCCCCEEEHEEEEEECCCCCEEEEEEEEECCCCCCCC
PYLLLKKAMDDTGKVAISKITIRKKESLAVIRVMDDVLALETMFFADEVRPASELGLNNI
CHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHH
EEKIKIGKKEEELAVEIVNNLTTEFKPEKYTNEYREELMNIIRQKIEGKEVETPDVVPEE
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
RKIVDLMEKLKKSVEATEEGEGKKKKKTKKKTG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRTIWKGAISFGLVNIPIKLVTATTKKNIRFRFLHKECKTPVSTKRFCPTCKKEVEYGDL
CCCHHHHHHHHCEEECCEEEEEEECCCCCEEEEEHHHHCCCCCCHHCCCHHHHHCCCCCC
VKGYEYEDNKFVVLKDEDFDNIPVKSTKTIDIVDFVKLEDIDPVYYIKTYYLNPAEGGEK
CCCEEECCCEEEEEECCCCCCCCCCCCCEEEHEEEEEECCCCCEEEEEEEEECCCCCCCC
PYLLLKKAMDDTGKVAISKITIRKKESLAVIRVMDDVLALETMFFADEVRPASELGLNNI
CHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHH
EEKIKIGKKEEELAVEIVNNLTTEFKPEKYTNEYREELMNIIRQKIEGKEVETPDVVPEE
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
RKIVDLMEKLKKSVEATEEGEGKKKKKTKKKTG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA