| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is ycbZ [H]
Identifier: 220931186
GI number: 220931186
Start: 350729
End: 353161
Strand: Direct
Name: ycbZ [H]
Synonym: Hore_03380
Alternate gene names: 220931186
Gene position: 350729-353161 (Clockwise)
Preceding gene: 220931184
Following gene: 220931187
Centisome position: 13.6
GC content: 38.35
Gene sequence:
>2433_bases GTGAGAGATATAAAAAATTTAAAACCAGAGGAATTGAAAAATGAAATTGATCCTGACCTTTTTTCGTTTAAAACTACCGA GGAAATAACCCCTTTTACCAGTGGTATAATTGGCCAGAGCCGGGCTGTTAAGGCTATGGATTTTGGGCTAAGGGTCAAAC AGGAAGGGTACAATATTTATATGGCTGGAATAACCGGAACGGGTAAAACCACCTATGCCAGAACCCTTACTAGAAGGGAG TCAAAAAAACACCCTGTTCCCCCTGATCTCTGCTATGTATTTAACTTCGAAGAACCTGAAAAACCACGGGCTTTAAAATT ACCTGCCGGGACAGGTATACATCTAAAAAAAGATATGGACAATATTATTGAGGAGCTGAAGGTAGAAATACCTAAAATAT TTGAGAGTGAAGAATATGAAGAACAGAAAAACAGGATAATGAATAGATACCAGCAGCTGTCAAATCAGATTATGGAGGAA TTTGAAATTGAAGTCAGGGATAAAGGCTTTATTCTGCAGCAGACTGTTCAGGGGCCGCTAACTGTACCCATTGATGAAGA TGGAAACCCTATAACCCAGGAAGATTATCAAAGTTTACCTGAAGATAAACGAAAAGAAATAAGGGAAAAAAACCAGGAAA TCCAGAACAAAATGGATGCTATTATGAAGAAAATAAGAGGATTGAAAACCGAGGCCCAGGAAGAGTTAGAAAATCTGGAA AAAAGTATGGTTTTATCTGTGGTAAAACCTATAATAAATCATCTGAAAGAAGAGTATCGTTTCTGTCAGGATATATTGGA TTATCTGGATGATGTCAAGAACGATATAGCCAAGAATCTGGGGATGTTTAAAGGGGATAATAAGAATAAAGAGGCAAAAA AAGCCTCTCTTCCTTTTACAATGGAAACAGGTGATGATGACTTTTTTGTCCGTTATAAGGTTAATTTACTGGTAAACAAT AGGGATACTGAAGGGGCTCCCGTCATTGTAGAAACAAATCCAACTTATTATAATTTATTCGGCAAAATTGAGGGAAGAAG CCAGTTTGGAACAGTTACCACAGATTTTACGATGATTAAGGGAGGTGCCATTCATAAAGCTAATGGTGGGTATTTGATTC TTAAAGCAAAGGATATATTACGTAATCCCTATGCCTGGGAAACACTTAAAAGGACCCTCATAAACCAGAGAATAGTGGTT GAAAATATCGGGGAACAATACCGGACTGTTCCGGTATTAACCTTAAAACCGGAGCCCTTTGATATTAAATTGAAGGTAAT AATGATAGGTAATCCTATGATATACCAGCTTTTATATAACCATGATGAAGAGTTTCAAAAACTATTTAAAATCAGGGCCC ATTTTGATGTAGAGATGGAAAAAAATAATGAAAATATAGAGAAGTTTGCTTCCTTTATTGCTTCTGTAAGTAACCGTGAA GGAATCAAACACTTTACAGCCGGGGCTGTTGCTGAGGTAATCAGCTATAGCAGCCGGCTTGCTGGAAAAAAAGATAAGTT ATCCACCAGGTTTAATCAGATAATAGAAATATTATATGAGGCCAGCACCTGGGCTGAACTTGACAATTCCAGTTATGTAG AGGCAAGCCATGTTATCAAGGCTGTTGAAGAGAAAGAGAGAAGGGCAAATTTAGTTGAAGAAAAGATGCAGGAAATGATT GAAAAAGAGCAAATATTGCTTGATGTGACCGGGGAGAAGGTCGGGCAAATTAATGGTTTATCGGTAATACAGACCGGCGG TTATTCCTTTGGCCGTCCTTCCCGGATAACAGCCCGGACCTTTATGGGACGGAAAGGTGTTATAAATATTGAGAGGGAAG CTAAAATGAGTGGCAAGATTCACAACAAAGGGGTTTTAATTCTTTCTGGTTTTCTTGGTGGTAAATATGCCCGGGAAAGA CCCCTGACCCTGTCAGCTTCACTGGCGTTTGAGCAAAGTTACAGTGGGGTAGATGGTGATAGTGCCACCTGTGCTGAATT GATTGCCCTACTATCGGCCCTGACCGGATTACCGGTAAAACAGAACCTGGCTATAACCGGTTCCCTTAACCAGAAGGGGA TGGTGCAACCGGTGGGAGGAATTAATCAGAAAATAGAAGGTTTTTATAAGGTCTGTGAAGCAAAAGGTTTAACTGGAAAG CAGGGAGTCATTATTCCGGAACAAAATACAGATAATTTGATGTTAAAAGAAGATGTTATTGCTACTGTAAAAAGAGGGGA ATTTCATATATATTCTATTAAGGAAATAGATGAAGCTATAGAGCTGATGTTTGGTCTTTCTGCCGAAGAGGTACACACTA AAGTTGAAGAGTCCCTTGATAAAATTAATGAAAAGGCCAGAGAATTTAACAGAGAGTTTAAAGAGGGGCGCAAAAAAGAA GAATTGGCAAAAATAATTATTAAATATTATTAA
Upstream 100 bases:
>100_bases TCAGACTGTTTAGTATATTATTAACAATTAGTTATGTAAAATACTTAAAACGCTTCTGATTTTCTATGGACTGGTATTAA TTAAGTAGAGGAGGAAGAAA
Downstream 100 bases:
>100_bases TTAAGAGATTCCTCAATTAATAATAAATAGAATAATTGAAGTTAAGCAATAGGGAGCCGGGAGGCTCCTTTTTTTATAAT AATTGTTCTAGATGGAATAA
Product: peptidase S16 lon domain-containing protein
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MRDIKNLKPEELKNEIDPDLFSFKTTEEITPFTSGIIGQSRAVKAMDFGLRVKQEGYNIYMAGITGTGKTTYARTLTRRE SKKHPVPPDLCYVFNFEEPEKPRALKLPAGTGIHLKKDMDNIIEELKVEIPKIFESEEYEEQKNRIMNRYQQLSNQIMEE FEIEVRDKGFILQQTVQGPLTVPIDEDGNPITQEDYQSLPEDKRKEIREKNQEIQNKMDAIMKKIRGLKTEAQEELENLE KSMVLSVVKPIINHLKEEYRFCQDILDYLDDVKNDIAKNLGMFKGDNKNKEAKKASLPFTMETGDDDFFVRYKVNLLVNN RDTEGAPVIVETNPTYYNLFGKIEGRSQFGTVTTDFTMIKGGAIHKANGGYLILKAKDILRNPYAWETLKRTLINQRIVV ENIGEQYRTVPVLTLKPEPFDIKLKVIMIGNPMIYQLLYNHDEEFQKLFKIRAHFDVEMEKNNENIEKFASFIASVSNRE GIKHFTAGAVAEVISYSSRLAGKKDKLSTRFNQIIEILYEASTWAELDNSSYVEASHVIKAVEEKERRANLVEEKMQEMI EKEQILLDVTGEKVGQINGLSVIQTGGYSFGRPSRITARTFMGRKGVINIEREAKMSGKIHNKGVLILSGFLGGKYARER PLTLSASLAFEQSYSGVDGDSATCAELIALLSALTGLPVKQNLAITGSLNQKGMVQPVGGINQKIEGFYKVCEAKGLTGK QGVIIPEQNTDNLMLKEDVIATVKRGEFHIYSIKEIDEAIELMFGLSAEEVHTKVEESLDKINEKAREFNREFKEGRKKE ELAKIIIKYY
Sequences:
>Translated_810_residues MRDIKNLKPEELKNEIDPDLFSFKTTEEITPFTSGIIGQSRAVKAMDFGLRVKQEGYNIYMAGITGTGKTTYARTLTRRE SKKHPVPPDLCYVFNFEEPEKPRALKLPAGTGIHLKKDMDNIIEELKVEIPKIFESEEYEEQKNRIMNRYQQLSNQIMEE FEIEVRDKGFILQQTVQGPLTVPIDEDGNPITQEDYQSLPEDKRKEIREKNQEIQNKMDAIMKKIRGLKTEAQEELENLE KSMVLSVVKPIINHLKEEYRFCQDILDYLDDVKNDIAKNLGMFKGDNKNKEAKKASLPFTMETGDDDFFVRYKVNLLVNN RDTEGAPVIVETNPTYYNLFGKIEGRSQFGTVTTDFTMIKGGAIHKANGGYLILKAKDILRNPYAWETLKRTLINQRIVV ENIGEQYRTVPVLTLKPEPFDIKLKVIMIGNPMIYQLLYNHDEEFQKLFKIRAHFDVEMEKNNENIEKFASFIASVSNRE GIKHFTAGAVAEVISYSSRLAGKKDKLSTRFNQIIEILYEASTWAELDNSSYVEASHVIKAVEEKERRANLVEEKMQEMI EKEQILLDVTGEKVGQINGLSVIQTGGYSFGRPSRITARTFMGRKGVINIEREAKMSGKIHNKGVLILSGFLGGKYARER PLTLSASLAFEQSYSGVDGDSATCAELIALLSALTGLPVKQNLAITGSLNQKGMVQPVGGINQKIEGFYKVCEAKGLTGK QGVIIPEQNTDNLMLKEDVIATVKRGEFHIYSIKEIDEAIELMFGLSAEEVHTKVEESLDKINEKAREFNREFKEGRKKE ELAKIIIKYY >Mature_810_residues MRDIKNLKPEELKNEIDPDLFSFKTTEEITPFTSGIIGQSRAVKAMDFGLRVKQEGYNIYMAGITGTGKTTYARTLTRRE SKKHPVPPDLCYVFNFEEPEKPRALKLPAGTGIHLKKDMDNIIEELKVEIPKIFESEEYEEQKNRIMNRYQQLSNQIMEE FEIEVRDKGFILQQTVQGPLTVPIDEDGNPITQEDYQSLPEDKRKEIREKNQEIQNKMDAIMKKIRGLKTEAQEELENLE KSMVLSVVKPIINHLKEEYRFCQDILDYLDDVKNDIAKNLGMFKGDNKNKEAKKASLPFTMETGDDDFFVRYKVNLLVNN RDTEGAPVIVETNPTYYNLFGKIEGRSQFGTVTTDFTMIKGGAIHKANGGYLILKAKDILRNPYAWETLKRTLINQRIVV ENIGEQYRTVPVLTLKPEPFDIKLKVIMIGNPMIYQLLYNHDEEFQKLFKIRAHFDVEMEKNNENIEKFASFIASVSNRE GIKHFTAGAVAEVISYSSRLAGKKDKLSTRFNQIIEILYEASTWAELDNSSYVEASHVIKAVEEKERRANLVEEKMQEMI EKEQILLDVTGEKVGQINGLSVIQTGGYSFGRPSRITARTFMGRKGVINIEREAKMSGKIHNKGVLILSGFLGGKYARER PLTLSASLAFEQSYSGVDGDSATCAELIALLSALTGLPVKQNLAITGSLNQKGMVQPVGGINQKIEGFYKVCEAKGLTGK QGVIIPEQNTDNLMLKEDVIATVKRGEFHIYSIKEIDEAIELMFGLSAEEVHTKVEESLDKINEKAREFNREFKEGRKKE ELAKIIIKYY
Specific function: Unknown
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family [H]
Homologues:
Organism=Escherichia coli, GI1787188, Length=430, Percent_Identity=35.1162790697674, Blast_Score=255, Evalue=7e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 [H]
Pfam domain/function: PF05362 Lon_C [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 92199; Mature: 92199
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDIKNLKPEELKNEIDPDLFSFKTTEEITPFTSGIIGQSRAVKAMDFGLRVKQEGYNIY CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCEEEECCCEEE MAGITGTGKTTYARTLTRRESKKHPVPPDLCYVFNFEEPEKPRALKLPAGTGIHLKKDMD EEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCEEHHHHH NIIEELKVEIPKIFESEEYEEQKNRIMNRYQQLSNQIMEEFEIEVRDKGFILQQTVQGPL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEHHCCCCE TVPIDEDGNPITQEDYQSLPEDKRKEIREKNQEIQNKMDAIMKKIRGLKTEAQEELENLE EEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH KSMVLSVVKPIINHLKEEYRFCQDILDYLDDVKNDIAKNLGMFKGDNKNKEAKKASLPFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCEE METGDDDFFVRYKVNLLVNNRDTEGAPVIVETNPTYYNLFGKIEGRSQFGTVTTDFTMIK EECCCCCEEEEEEEEEEEECCCCCCCCEEEECCCCEEEEEEEECCCCCCCCEEECEEEEE GGAIHKANGGYLILKAKDILRNPYAWETLKRTLINQRIVVENIGEQYRTVPVLTLKPEPF CCEEEECCCCEEEEEEHHHHCCCHHHHHHHHHHHCCHHHHHHHCHHHHEEEEEEECCCCC DIKLKVIMIGNPMIYQLLYNHDEEFQKLFKIRAHFDVEMEKNNENIEKFASFIASVSNRE EEEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCC GIKHFTAGAVAEVISYSSRLAGKKDKLSTRFNQIIEILYEASTWAELDNSSYVEASHVIK CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AVEEKERRANLVEEKMQEMIEKEQILLDVTGEKVGQINGLSVIQTGGYSFGRPSRITART HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHCCCCCEEEEEECCCCCCCCCCEEHHH FMGRKGVINIEREAKMSGKIHNKGVLILSGFLGGKYARERPLTLSASLAFEQSYSGVDGD HCCCCCEEEECHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHCCCCCCCC SATCAELIALLSALTGLPVKQNLAITGSLNQKGMVQPVGGINQKIEGFYKVCEAKGLTGK CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC QGVIIPEQNTDNLMLKEDVIATVKRGEFHIYSIKEIDEAIELMFGLSAEEVHTKVEESLD CCEEECCCCCCCEEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHH KINEKAREFNREFKEGRKKEELAKIIIKYY HHHHHHHHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure MRDIKNLKPEELKNEIDPDLFSFKTTEEITPFTSGIIGQSRAVKAMDFGLRVKQEGYNIY CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCEEEECCCEEE MAGITGTGKTTYARTLTRRESKKHPVPPDLCYVFNFEEPEKPRALKLPAGTGIHLKKDMD EEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCEEHHHHH NIIEELKVEIPKIFESEEYEEQKNRIMNRYQQLSNQIMEEFEIEVRDKGFILQQTVQGPL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEEHHCCCCE TVPIDEDGNPITQEDYQSLPEDKRKEIREKNQEIQNKMDAIMKKIRGLKTEAQEELENLE EEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH KSMVLSVVKPIINHLKEEYRFCQDILDYLDDVKNDIAKNLGMFKGDNKNKEAKKASLPFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCEE METGDDDFFVRYKVNLLVNNRDTEGAPVIVETNPTYYNLFGKIEGRSQFGTVTTDFTMIK EECCCCCEEEEEEEEEEEECCCCCCCCEEEECCCCEEEEEEEECCCCCCCCEEECEEEEE GGAIHKANGGYLILKAKDILRNPYAWETLKRTLINQRIVVENIGEQYRTVPVLTLKPEPF CCEEEECCCCEEEEEEHHHHCCCHHHHHHHHHHHCCHHHHHHHCHHHHEEEEEEECCCCC DIKLKVIMIGNPMIYQLLYNHDEEFQKLFKIRAHFDVEMEKNNENIEKFASFIASVSNRE EEEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCC GIKHFTAGAVAEVISYSSRLAGKKDKLSTRFNQIIEILYEASTWAELDNSSYVEASHVIK CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AVEEKERRANLVEEKMQEMIEKEQILLDVTGEKVGQINGLSVIQTGGYSFGRPSRITART HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHCCCCCEEEEEECCCCCCCCCCEEHHH FMGRKGVINIEREAKMSGKIHNKGVLILSGFLGGKYARERPLTLSASLAFEQSYSGVDGD HCCCCCEEEECHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHCCCCCCCC SATCAELIALLSALTGLPVKQNLAITGSLNQKGMVQPVGGINQKIEGFYKVCEAKGLTGK CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC QGVIIPEQNTDNLMLKEDVIATVKRGEFHIYSIKEIDEAIELMFGLSAEEVHTKVEESLD CCEEECCCCCCCEEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHH KINEKAREFNREFKEGRKKEELAKIIIKYY HHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]