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The map label for this gene is ycjO [C]

Identifier: 220931178

GI number: 220931178

Start: 340166

End: 341092

Strand: Direct

Name: ycjO [C]

Synonym: Hore_03300

Alternate gene names: 220931178

Gene position: 340166-341092 (Clockwise)

Preceding gene: 220931177

Following gene: 220931179

Centisome position: 13.19

GC content: 36.46

Gene sequence:

>927_bases
ATGAAACCAGGTATTGAAAATGGTCTGGATTTAGTAACTGATAGTAAACCAAGTTTGTTTGAAAAATTTAAGCCCTATCT
GATAATTTTGCCGGCTTTTATCCTCACAATAGGGATATTAGTACCTTTTGCTACAGGGGTATATTGGTCTTTAACAAATT
ATAATTTAATGTATCCCAATTATTCATTTATCGGGATTACAAATTATATTGATTTATTCACCAGTTCAGATTTCTGGCAT
GCCCTGAAAGTGTCAGGGTTATATGTGTTATTTGCAGTTGGGGTTGAAGTGCTTCTGGGGTTAGCGATTGCTCTCTTATT
AAACAGAGATACAATTCTGGCTAAAATACTGAGACCAATGTTAATATTTCCTCTGTTAATAGCACCGGTCGTTGGTACCT
TGATGTGGAAGTTAATGATGAGTCCTGAATATGGAGTACTAAATTATTTCCTCAGCTTAATAAATCCAGCTTTAAGGGAT
TTTCCCTGGGCAGCTTCATCAAAATTTGCCCTCCTGTCTGTTGTAATAGTGGATGTCTGGATCTTTACACCATTTATTGC
CTTGCTGCTTCTTGCTGGATTAAGGTCTCTACCTGCTCCACCATTTGAAGCAGCTAAGGTTGATGGTGCATCAAACTGGT
TTATTTTCAAAAACCTAACTATGCCTATGTTAACGCCTTATCTGGTTGTAGCAGTTATTTTTAGACTGGTAGATAGTATC
AGGATGTTTGATATACCCTTTGCTATGACCAAAGGTGGACCTGGTGATGCCCTGATGAATCTGCAGATTACAGCCTTTAC
TGAATCGTTTACCTATCTTAACTTGGCTGTAGGTTGTGCTTATATGTTTGTAACCTGGATAATTATCTATTTTATTAGTA
AAAAAATGATAAATTATTGGTTAAAATGGAGGGCGCGTTTAAGTTAA

Upstream 100 bases:

>100_bases
GTTTTAGCAGGTTATATACTAAAACTTCCGTAATATTTGACTATCTTTTATTTAATTAATTATATTGGTTATACCATATT
TTAGTTAGGAGGAATTTTTA

Downstream 100 bases:

>100_bases
ACATTATCTGAGGAGGAAGTAATAATGAAAAAAAATAGAGAAAATTTATGGAAAAATACGGGTGCAAATCTGGCCCTTAT
TATAATATTTATCTTTGTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MKPGIENGLDLVTDSKPSLFEKFKPYLIILPAFILTIGILVPFATGVYWSLTNYNLMYPNYSFIGITNYIDLFTSSDFWH
ALKVSGLYVLFAVGVEVLLGLAIALLLNRDTILAKILRPMLIFPLLIAPVVGTLMWKLMMSPEYGVLNYFLSLINPALRD
FPWAASSKFALLSVVIVDVWIFTPFIALLLLAGLRSLPAPPFEAAKVDGASNWFIFKNLTMPMLTPYLVVAVIFRLVDSI
RMFDIPFAMTKGGPGDALMNLQITAFTESFTYLNLAVGCAYMFVTWIIIYFISKKMINYWLKWRARLS

Sequences:

>Translated_308_residues
MKPGIENGLDLVTDSKPSLFEKFKPYLIILPAFILTIGILVPFATGVYWSLTNYNLMYPNYSFIGITNYIDLFTSSDFWH
ALKVSGLYVLFAVGVEVLLGLAIALLLNRDTILAKILRPMLIFPLLIAPVVGTLMWKLMMSPEYGVLNYFLSLINPALRD
FPWAASSKFALLSVVIVDVWIFTPFIALLLLAGLRSLPAPPFEAAKVDGASNWFIFKNLTMPMLTPYLVVAVIFRLVDSI
RMFDIPFAMTKGGPGDALMNLQITAFTESFTYLNLAVGCAYMFVTWIIIYFISKKMINYWLKWRARLS
>Mature_308_residues
MKPGIENGLDLVTDSKPSLFEKFKPYLIILPAFILTIGILVPFATGVYWSLTNYNLMYPNYSFIGITNYIDLFTSSDFWH
ALKVSGLYVLFAVGVEVLLGLAIALLLNRDTILAKILRPMLIFPLLIAPVVGTLMWKLMMSPEYGVLNYFLSLINPALRD
FPWAASSKFALLSVVIVDVWIFTPFIALLLLAGLRSLPAPPFEAAKVDGASNWFIFKNLTMPMLTPYLVVAVIFRLVDSI
RMFDIPFAMTKGGPGDALMNLQITAFTESFTYLNLAVGCAYMFVTWIIIYFISKKMINYWLKWRARLS

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=242, Percent_Identity=27.2727272727273, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789861, Length=278, Percent_Identity=27.3381294964029, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34751; Mature: 34751

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPGIENGLDLVTDSKPSLFEKFKPYLIILPAFILTIGILVPFATGVYWSLTNYNLMYPN
CCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
YSFIGITNYIDLFTSSDFWHALKVSGLYVLFAVGVEVLLGLAIALLLNRDTILAKILRPM
CEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LIFPLLIAPVVGTLMWKLMMSPEYGVLNYFLSLINPALRDFPWAASSKFALLSVVIVDVW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
IFTPFIALLLLAGLRSLPAPPFEAAKVDGASNWFIFKNLTMPMLTPYLVVAVIFRLVDSI
HHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
RMFDIPFAMTKGGPGDALMNLQITAFTESFTYLNLAVGCAYMFVTWIIIYFISKKMINYW
HHHCCCEEECCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKWRARLS
HHHHHCCC
>Mature Secondary Structure
MKPGIENGLDLVTDSKPSLFEKFKPYLIILPAFILTIGILVPFATGVYWSLTNYNLMYPN
CCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
YSFIGITNYIDLFTSSDFWHALKVSGLYVLFAVGVEVLLGLAIALLLNRDTILAKILRPM
CEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LIFPLLIAPVVGTLMWKLMMSPEYGVLNYFLSLINPALRDFPWAASSKFALLSVVIVDVW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
IFTPFIALLLLAGLRSLPAPPFEAAKVDGASNWFIFKNLTMPMLTPYLVVAVIFRLVDSI
HHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
RMFDIPFAMTKGGPGDALMNLQITAFTESFTYLNLAVGCAYMFVTWIIIYFISKKMINYW
HHHCCCEEECCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKWRARLS
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]