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The map label for this gene is mtrB [H]

Identifier: 220931165

GI number: 220931165

Start: 326853

End: 327071

Strand: Direct

Name: mtrB [H]

Synonym: Hore_03170

Alternate gene names: 220931165

Gene position: 326853-327071 (Clockwise)

Preceding gene: 220931164

Following gene: 220931166

Centisome position: 12.68

GC content: 34.7

Gene sequence:

>219_bases
ATGGATGTTAACGCTGATTTTGTTGTCGTTAAAGCATTAGAAGATGGTGTAACCATTATTGGCTTAACCAGAGGTAAGGA
GACTAAATTTGCCCATACTGAAAAATTAGATAAAGGTGAGGTGCTTGTAGCTCAATTTACTGAACATACATCAGCGATTA
AAATTAGAGGTAAAGCTGAACTTTTGACAAAACACGGGAAATTTACTTCTGGAAATTAA

Upstream 100 bases:

>100_bases
TAATCAGCCACAACTCCTTCAATGCTACTACTGAAGGAGATTATTCTTGACATTGAAAAAAAAAAGTTGTATGATAAACT
AGAATAAGGAGGGTACAGCT

Downstream 100 bases:

>100_bases
TATAACACTGAAAATATACCAGGCTCCTAGAAGGGCTGGTTTTTCTTTATTATTAAATTTGTTTAGAAAATGGTCAATAC
AGTATAATATACTTGAGAGG

Product: transcription attenuation protein MtrB

Products: NA

Alternate protein names: Trp RNA-binding attenuation protein; TRAP; Tryptophan RNA-binding attenuator protein [H]

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MDVNADFVVVKALEDGVTIIGLTRGKETKFAHTEKLDKGEVLVAQFTEHTSAIKIRGKAELLTKHGKFTSGN

Sequences:

>Translated_72_residues
MDVNADFVVVKALEDGVTIIGLTRGKETKFAHTEKLDKGEVLVAQFTEHTSAIKIRGKAELLTKHGKFTSGN
>Mature_72_residues
MDVNADFVVVKALEDGVTIIGLTRGKETKFAHTEKLDKGEVLVAQFTEHTSAIKIRGKAELLTKHGKFTSGN

Specific function: Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptop

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mtrB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000824
- InterPro:   IPR016031 [H]

Pfam domain/function: PF02081 TrpBP [H]

EC number: NA

Molecular weight: Translated: 7841; Mature: 7841

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVNADFVVVKALEDGVTIIGLTRGKETKFAHTEKLDKGEVLVAQFTEHTSAIKIRGKAE
CCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCEE
LLTKHGKFTSGN
EEECCCCCCCCC
>Mature Secondary Structure
MDVNADFVVVKALEDGVTIIGLTRGKETKFAHTEKLDKGEVLVAQFTEHTSAIKIRGKAE
CCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCEE
LLTKHGKFTSGN
EEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10369778 [H]