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The map label for this gene is amyA [C]

Identifier: 220931089

GI number: 220931089

Start: 248392

End: 249486

Strand: Direct

Name: amyA [C]

Synonym: Hore_02410

Alternate gene names: 220931089

Gene position: 248392-249486 (Clockwise)

Preceding gene: 220931088

Following gene: 220931090

Centisome position: 9.63

GC content: 36.99

Gene sequence:

>1095_bases
ATGCAGGCATTTTACTGGGATTGTGAATCTAACTGGTACAGGAAAGTTAAAGAAAAGTTACCTGAATTATATTATGCTGG
AATAACTGATATCTGGTTGCCGCCCCCATCCCGGGGTTTAAACCAGGGGGGGATGGGCTATGATATTTACGATCATTACA
ATTTGAACACCAGGTTTGGTACAAAAAGGGAGTTAAAAGATTTAATCAGGACAGCCCACCGCTATGGAATAAGGGTAATA
GCAGATGTAGTTATGGGACATGCCATCGGAGGTAAAAAAGAATATAACCCATACCTTGAGACCGAAACCTATACAAAATT
TAATCAGCCAGAATTTCCTAAAAATTATAAACATTTTTGCCATAATTGTGTTGGTTGCCATACAGATAATAGTTACGGGG
AAAAGATATGCTATTATTCTGATAATGGTTATATGAAGGACAACCTTATCAAATGGTGCCGCTGGTTAAAGGACAGTATA
GGATTTGACGGATTCAGACTGGATAATTGTAAGCAGATAAGGTGGGACTTTATCAGGGACTGGAAAGAAGCTTTGCAGAC
CTTCACGATTGGTGAGTATTGGGATGGAGATAGAGGATTATTACAACGATGGCGGGATTATACCAACTGTAATGTCTTTA
ATTTTCCACTTTTCTATTCCCTGAAGGAGATGTGTAATAATCCAGCCTTATTTGATATGAGATGTTTAATGGATAATGTT
TTCGAAGGTTCAGTTAGTTTTGTTGAAAATCATGATACTGACCGGTTTGACCCCGTTATTTTTAATAAGATACTGGCCTA
TGCCTTTAATATTTTGTTTACCGATTATACCTGTATTTTCTGGAAGGACTATTATATATATAATTTAAAAAGAGAGATAG
ATAGTCTCTTAGAAATCCGTAATCGAACAGTTGACCGGGTAGAGATAGAATATGCTGATTATGATCTTTTAGTTGCCCGG
CGGGGGAATTACCGGATCTTTATAAATAAAGGGGAAACTACCCGGATTTATAATGGAATGAGAATAGATGGAGCCAATTA
TAAAATAGCCTACAATACCCGGGCTGAACATTATCTTGAAGAAAGTATGACTTAA

Upstream 100 bases:

>100_bases
ATAATGTAAAATTAATATAAGGGATATAATTTACGAAAACGATTGAATATTTAACGCTATAGACTTGAAATGAAGGTGAT
AAGACATGGGTAGGGTCATT

Downstream 100 bases:

>100_bases
GGCTATATTTCAAGATTTAAAAGTTAGACCGGAGTTTACAGGAATTTTAAATTTTAATATATAAAAAAATTTCTAATTTT
TGCTTGACAAAAATTAAAAA

Product: alpha amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MQAFYWDCESNWYRKVKEKLPELYYAGITDIWLPPPSRGLNQGGMGYDIYDHYNLNTRFGTKRELKDLIRTAHRYGIRVI
ADVVMGHAIGGKKEYNPYLETETYTKFNQPEFPKNYKHFCHNCVGCHTDNSYGEKICYYSDNGYMKDNLIKWCRWLKDSI
GFDGFRLDNCKQIRWDFIRDWKEALQTFTIGEYWDGDRGLLQRWRDYTNCNVFNFPLFYSLKEMCNNPALFDMRCLMDNV
FEGSVSFVENHDTDRFDPVIFNKILAYAFNILFTDYTCIFWKDYYIYNLKREIDSLLEIRNRTVDRVEIEYADYDLLVAR
RGNYRIFINKGETTRIYNGMRIDGANYKIAYNTRAEHYLEESMT

Sequences:

>Translated_364_residues
MQAFYWDCESNWYRKVKEKLPELYYAGITDIWLPPPSRGLNQGGMGYDIYDHYNLNTRFGTKRELKDLIRTAHRYGIRVI
ADVVMGHAIGGKKEYNPYLETETYTKFNQPEFPKNYKHFCHNCVGCHTDNSYGEKICYYSDNGYMKDNLIKWCRWLKDSI
GFDGFRLDNCKQIRWDFIRDWKEALQTFTIGEYWDGDRGLLQRWRDYTNCNVFNFPLFYSLKEMCNNPALFDMRCLMDNV
FEGSVSFVENHDTDRFDPVIFNKILAYAFNILFTDYTCIFWKDYYIYNLKREIDSLLEIRNRTVDRVEIEYADYDLLVAR
RGNYRIFINKGETTRIYNGMRIDGANYKIAYNTRAEHYLEESMT
>Mature_364_residues
MQAFYWDCESNWYRKVKEKLPELYYAGITDIWLPPPSRGLNQGGMGYDIYDHYNLNTRFGTKRELKDLIRTAHRYGIRVI
ADVVMGHAIGGKKEYNPYLETETYTKFNQPEFPKNYKHFCHNCVGCHTDNSYGEKICYYSDNGYMKDNLIKWCRWLKDSI
GFDGFRLDNCKQIRWDFIRDWKEALQTFTIGEYWDGDRGLLQRWRDYTNCNVFNFPLFYSLKEMCNNPALFDMRCLMDNV
FEGSVSFVENHDTDRFDPVIFNKILAYAFNILFTDYTCIFWKDYYIYNLKREIDSLLEIRNRTVDRVEIEYADYDLLVAR
RGNYRIFINKGETTRIYNGMRIDGANYKIAYNTRAEHYLEESMT

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013776
- InterPro:   IPR015237
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF09154 DUF1939 [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 43708; Mature: 43708

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFYWDCESNWYRKVKEKLPELYYAGITDIWLPPPSRGLNQGGMGYDIYDHYNLNTRFG
CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
TKRELKDLIRTAHRYGIRVIADVVMGHAIGGKKEYNPYLETETYTKFNQPEFPKNYKHFC
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
HNCVGCHTDNSYGEKICYYSDNGYMKDNLIKWCRWLKDSIGFDGFRLDNCKQIRWDFIRD
HHHCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH
WKEALQTFTIGEYWDGDRGLLQRWRDYTNCNVFNFPLFYSLKEMCNNPALFDMRCLMDNV
HHHHHHHEECCCCCCCCHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCCEEHHHHHHHHH
FEGSVSFVENHDTDRFDPVIFNKILAYAFNILFTDYTCIFWKDYYIYNLKREIDSLLEIR
HCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHHHHHHHHH
NRTVDRVEIEYADYDLLVARRGNYRIFINKGETTRIYNGMRIDGANYKIAYNTRAEHYLE
CCCCCEEEEEECCEEEEEEECCCEEEEEECCCCEEEECCEEECCCCEEEEECCCHHHHHH
ESMT
HCCC
>Mature Secondary Structure
MQAFYWDCESNWYRKVKEKLPELYYAGITDIWLPPPSRGLNQGGMGYDIYDHYNLNTRFG
CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
TKRELKDLIRTAHRYGIRVIADVVMGHAIGGKKEYNPYLETETYTKFNQPEFPKNYKHFC
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
HNCVGCHTDNSYGEKICYYSDNGYMKDNLIKWCRWLKDSIGFDGFRLDNCKQIRWDFIRD
HHHCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH
WKEALQTFTIGEYWDGDRGLLQRWRDYTNCNVFNFPLFYSLKEMCNNPALFDMRCLMDNV
HHHHHHHEECCCCCCCCHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCCEEHHHHHHHHH
FEGSVSFVENHDTDRFDPVIFNKILAYAFNILFTDYTCIFWKDYYIYNLKREIDSLLEIR
HCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHHHHHHHHH
NRTVDRVEIEYADYDLLVARRGNYRIFINKGETTRIYNGMRIDGANYKIAYNTRAEHYLE
CCCCCEEEEEECCEEEEEEECCCEEEEEECCCCEEEECCEEECCCCEEEEECCCHHHHHH
ESMT
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6185474; 6170539; 2830166; 6156671; 10924103 [H]