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The map label for this gene is ydiC [H]

Identifier: 220931045

GI number: 220931045

Start: 202043

End: 202762

Strand: Direct

Name: ydiC [H]

Synonym: Hore_01960

Alternate gene names: 220931045

Gene position: 202043-202762 (Clockwise)

Preceding gene: 220931044

Following gene: 220931046

Centisome position: 7.84

GC content: 45.14

Gene sequence:

>720_bases
ATGTTAGTTATGGGAATTGACACCAGTGGGGCGGTTGGTTCGGTTGGCCTTTACAATGATGATGGAGTCCTTGGTGAAAT
CAATATAAAACTTAAAAGAAGGCACAGTGAACGGCTGTTGCCGGTAATAGACCGACTCTTAATGGAGTGTGGCCGTGAGA
TTGATCAAATAAATGGTGTTGGAGTTGTCACCGGACCTGGTTCTTTTACTGGCCTCAGGATAGGAATGAGTACTGCTAAA
TCCTTTGCTCAGGTTTTAAATATACCGGTAGTGGGTTTATCCTCTCTGGACATCCTGGCCTATAACCTGATAATAGCTGA
AGGCTGGATTGTACCTGTTATTGATGCCCGGAATGCGAGGGTTTATACTTCCCTGTACCGGGGTTGGAGTCGTGATATTA
AAAATGCAAAGGTCCGGGATGAAAGGGCCCTCTCTGTTAATGATTTGATTAATGAGCTGTCTTCAATAGATGATGGAAAA
CCATTTTATTTTGTAGGCAATGGAGTTGAGGAATATCGCGAGGTCTGGGAAAAGGCTGGCTTTAACTGTGTTCTGGCTCC
CCGGTCGGCCGGTATTCCTCATGGTGGCTCTATTGCAGAACTGAGCTTTTATCATCTGAAAAATGGCCAGGGGCAAAATT
ACCTGGAGGTCAGTGCCAACTATCTGAAAAGGCCCCAGGCTGAAATCAACTGGGAGAGAAAACATAAGTCAGGTGATTAG

Upstream 100 bases:

>100_bases
ATGTAAAGATAGAAAAAAGTAATCATGACACCAGGCGGAAATTAACTTTTGAAGCAGAGGGTGAAAAAAGTAAAAGGTTA
CTGGAAGGGTTGGCTCAGAA

Downstream 100 bases:

>100_bases
ATTGGGTTTAACAATCAGGCCCATGGAAGAAAGTGATCTCCCCAGGGTGCTTGAAATTGAGGGGAAATGTTTTCAAGCCC
CCTGGTCCAAAAAAGCATTT

Product: O-sialoglycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLVMGIDTSGAVGSVGLYNDDGVLGEINIKLKRRHSERLLPVIDRLLMECGREIDQINGVGVVTGPGSFTGLRIGMSTAK
SFAQVLNIPVVGLSSLDILAYNLIIAEGWIVPVIDARNARVYTSLYRGWSRDIKNAKVRDERALSVNDLINELSSIDDGK
PFYFVGNGVEEYREVWEKAGFNCVLAPRSAGIPHGGSIAELSFYHLKNGQGQNYLEVSANYLKRPQAEINWERKHKSGD

Sequences:

>Translated_239_residues
MLVMGIDTSGAVGSVGLYNDDGVLGEINIKLKRRHSERLLPVIDRLLMECGREIDQINGVGVVTGPGSFTGLRIGMSTAK
SFAQVLNIPVVGLSSLDILAYNLIIAEGWIVPVIDARNARVYTSLYRGWSRDIKNAKVRDERALSVNDLINELSSIDDGK
PFYFVGNGVEEYREVWEKAGFNCVLAPRSAGIPHGGSIAELSFYHLKNGQGQNYLEVSANYLKRPQAEINWERKHKSGD
>Mature_239_residues
MLVMGIDTSGAVGSVGLYNDDGVLGEINIKLKRRHSERLLPVIDRLLMECGREIDQINGVGVVTGPGSFTGLRIGMSTAK
SFAQVLNIPVVGLSSLDILAYNLIIAEGWIVPVIDARNARVYTSLYRGWSRDIKNAKVRDERALSVNDLINELSSIDDGK
PFYFVGNGVEEYREVWEKAGFNCVLAPRSAGIPHGGSIAELSFYHLKNGQGQNYLEVSANYLKRPQAEINWERKHKSGD

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=129, Percent_Identity=34.1085271317829, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26322; Mature: 26322

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVMGIDTSGAVGSVGLYNDDGVLGEINIKLKRRHSERLLPVIDRLLMECGREIDQINGV
CEEEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCC
GVVTGPGSFTGLRIGMSTAKSFAQVLNIPVVGLSSLDILAYNLIIAEGWIVPVIDARNAR
EEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEECCCEEEEEECCCCC
VYTSLYRGWSRDIKNAKVRDERALSVNDLINELSSIDDGKPFYFVGNGVEEYREVWEKAG
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCC
FNCVLAPRSAGIPHGGSIAELSFYHLKNGQGQNYLEVSANYLKRPQAEINWERKHKSGD
CEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECHHHHHCCCHHCCCCCCCCCCC
>Mature Secondary Structure
MLVMGIDTSGAVGSVGLYNDDGVLGEINIKLKRRHSERLLPVIDRLLMECGREIDQINGV
CEEEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCC
GVVTGPGSFTGLRIGMSTAKSFAQVLNIPVVGLSSLDILAYNLIIAEGWIVPVIDARNAR
EEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEECCCEEEEEECCCCC
VYTSLYRGWSRDIKNAKVRDERALSVNDLINELSSIDDGKPFYFVGNGVEEYREVWEKAG
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCC
FNCVLAPRSAGIPHGGSIAELSFYHLKNGQGQNYLEVSANYLKRPQAEINWERKHKSGD
CEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECHHHHHCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]