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The map label for this gene is yndF [H]

Identifier: 220930862

GI number: 220930862

Start: 13793

End: 14968

Strand: Direct

Name: yndF [H]

Synonym: Hore_00120

Alternate gene names: 220930862

Gene position: 13793-14968 (Clockwise)

Preceding gene: 220930861

Following gene: 220930865

Centisome position: 0.53

GC content: 42.18

Gene sequence:

>1176_bases
ATGAAATCACGAATTCTACCAGCAATAATGGTTATAGTTTTAATATCTATCCTGTTAACAGGGTGCTGGGATTTAAAGGA
TATAGATGAGAGGGCAACAGTTCTGGCAATTGGAATAGATTATGCCGATATTCCCCAGCCCGGCAATTTTGAAGGTTCCT
ATATGGTTAAGGTTACCCTCCAGATTGCTATTTCTGAACAGATGACCGGTGGGGCCGGGCAGGCCCCTCCCATGGGGGAA
CAGGTTGTCTGGAATATCAGTTCCACCGGGGCCACGATGGCCCGGGCTATAGAGCTCTGCCAGGAAAAATTAAAATATAG
TCTTTTTTTTGGTCATGTCCGAATTTTGATATTTGGTCAGAAAGTGGCCCAGAATGGAGTTAACCAATTTTTAAATTATT
TCAGAAACCATCCTATGTTCCGTAGATTATCTTATATTCTAGTTAGTAAGGGGGATGCAGCTGATGTTTTAAAGACCTTT
CCTAAATCAGCTACAATTCAGGCCATGTTCTTAATGAATATGGTGGAAACAGCCCAGAATACAGGGCGTATGCCCGATAT
ACCCTTTATGGAGTTTGTGGTCAGGTTAATAGACAAAGGAATTGACCCGGTGGCTATCATGGTATCTTCCCACAAGGATT
CGGTTGTCAATACGGGAGTGGCTGTCTTCCGGGGGGATAATATGGTGGGGTCCCTTGATCTCTATGAAACCTGGAATTTC
ATCCAGATTACTGAAAACCAAAGAGGTGGTATAGAGGTTGTCAGGGATGTGGAGGACGAACTAGGGAGGGTAACCATCCA
ACTGACAGGTGTTAATTCTAATGTTAGACCTATAATTCAAAAGAACGGAAAGGTTAAATTTATAATAGATATGGAGGTAG
AAGGTCGGATTGTTTCCCAGGAAACCCAGACTGACTATAATGATCCGGTACTTTTTTCAGCCCTGGAGGAGAGAGTGGAA
AAGGAATATAAACGTGAATTAGAACAGATGATTAATAAAGTCCAAAAACAATTTAAAGCAGATATATTTGGTTTTGGCCA
GCAGCTCAGGGCCTATCAGAACCGGGAATGGAAGGAGATAAATAACTGGAGAAAAGCCTTCAGTGAAGGAGAGCTGGACC
TAACTATATATGTAGATATCCGGAGGATGGGGATGAGTACCTTTACGAAAAAATAG

Upstream 100 bases:

>100_bases
TGAATGTCATGGGGAAGTTTGGAGGGTTAGTAATTATAACCGTGACTCCCCTGTTGTATATTATCTCTCTCATTAGAAAT
ATTAAAGGGGGACAGAAGGC

Downstream 100 bases:

>100_bases
AAATGCTGCTAAATCAGGGTTTTCACAATTGATTTTTCTGTTCGTAAAGCTGAGCGGTGAATTTTTTATTAAGAAATTTT
TTATTTGCTAAAAAACATAA

Product: spore germination B3 GerAC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKSRILPAIMVIVLISILLTGCWDLKDIDERATVLAIGIDYADIPQPGNFEGSYMVKVTLQIAISEQMTGGAGQAPPMGE
QVVWNISSTGATMARAIELCQEKLKYSLFFGHVRILIFGQKVAQNGVNQFLNYFRNHPMFRRLSYILVSKGDAADVLKTF
PKSATIQAMFLMNMVETAQNTGRMPDIPFMEFVVRLIDKGIDPVAIMVSSHKDSVVNTGVAVFRGDNMVGSLDLYETWNF
IQITENQRGGIEVVRDVEDELGRVTIQLTGVNSNVRPIIQKNGKVKFIIDMEVEGRIVSQETQTDYNDPVLFSALEERVE
KEYKRELEQMINKVQKQFKADIFGFGQQLRAYQNREWKEINNWRKAFSEGELDLTIYVDIRRMGMSTFTKK

Sequences:

>Translated_391_residues
MKSRILPAIMVIVLISILLTGCWDLKDIDERATVLAIGIDYADIPQPGNFEGSYMVKVTLQIAISEQMTGGAGQAPPMGE
QVVWNISSTGATMARAIELCQEKLKYSLFFGHVRILIFGQKVAQNGVNQFLNYFRNHPMFRRLSYILVSKGDAADVLKTF
PKSATIQAMFLMNMVETAQNTGRMPDIPFMEFVVRLIDKGIDPVAIMVSSHKDSVVNTGVAVFRGDNMVGSLDLYETWNF
IQITENQRGGIEVVRDVEDELGRVTIQLTGVNSNVRPIIQKNGKVKFIIDMEVEGRIVSQETQTDYNDPVLFSALEERVE
KEYKRELEQMINKVQKQFKADIFGFGQQLRAYQNREWKEINNWRKAFSEGELDLTIYVDIRRMGMSTFTKK
>Mature_391_residues
MKSRILPAIMVIVLISILLTGCWDLKDIDERATVLAIGIDYADIPQPGNFEGSYMVKVTLQIAISEQMTGGAGQAPPMGE
QVVWNISSTGATMARAIELCQEKLKYSLFFGHVRILIFGQKVAQNGVNQFLNYFRNHPMFRRLSYILVSKGDAADVLKTF
PKSATIQAMFLMNMVETAQNTGRMPDIPFMEFVVRLIDKGIDPVAIMVSSHKDSVVNTGVAVFRGDNMVGSLDLYETWNF
IQITENQRGGIEVVRDVEDELGRVTIQLTGVNSNVRPIIQKNGKVKFIIDMEVEGRIVSQETQTDYNDPVLFSALEERVE
KEYKRELEQMINKVQKQFKADIFGFGQQLRAYQNREWKEINNWRKAFSEGELDLTIYVDIRRMGMSTFTKK

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 44380; Mature: 44380

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRILPAIMVIVLISILLTGCWDLKDIDERATVLAIGIDYADIPQPGNFEGSYMVKVTL
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCEEEEEEE
QIAISEQMTGGAGQAPPMGEQVVWNISSTGATMARAIELCQEKLKYSLFFGHVRILIFGQ
EEEEEHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECH
KVAQNGVNQFLNYFRNHPMFRRLSYILVSKGDAADVLKTFPKSATIQAMFLMNMVETAQN
HHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TGRMPDIPFMEFVVRLIDKGIDPVAIMVSSHKDSVVNTGVAVFRGDNMVGSLDLYETWNF
CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCEEEEECCCCEEEEEHHHCCCE
IQITENQRGGIEVVRDVEDELGRVTIQLTGVNSNVRPIIQKNGKVKFIIDMEVEGRIVSQ
EEEECCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHEECCCCEEEEEEEEECCEEECC
ETQTDYNDPVLFSALEERVEKEYKRELEQMINKVQKQFKADIFGFGQQLRAYQNREWKEI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
NNWRKAFSEGELDLTIYVDIRRMGMSTFTKK
HHHHHHHCCCCEEEEEEEEEEHHCCHHHCCC
>Mature Secondary Structure
MKSRILPAIMVIVLISILLTGCWDLKDIDERATVLAIGIDYADIPQPGNFEGSYMVKVTL
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCEEEEEEE
QIAISEQMTGGAGQAPPMGEQVVWNISSTGATMARAIELCQEKLKYSLFFGHVRILIFGQ
EEEEEHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECH
KVAQNGVNQFLNYFRNHPMFRRLSYILVSKGDAADVLKTFPKSATIQAMFLMNMVETAQN
HHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TGRMPDIPFMEFVVRLIDKGIDPVAIMVSSHKDSVVNTGVAVFRGDNMVGSLDLYETWNF
CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCEEEEECCCCEEEEEHHHCCCE
IQITENQRGGIEVVRDVEDELGRVTIQLTGVNSNVRPIIQKNGKVKFIIDMEVEGRIVSQ
EEEECCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHEECCCCEEEEEEEEECCEEECC
ETQTDYNDPVLFSALEERVEKEYKRELEQMINKVQKQFKADIFGFGQQLRAYQNREWKEI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
NNWRKAFSEGELDLTIYVDIRRMGMSTFTKK
HHHHHHHCCCCEEEEEEEEEEHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]