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The map label for this gene is yiaD [H]

Identifier: 220919426

GI number: 220919426

Start: 4838395

End: 4839015

Strand: Direct

Name: yiaD [H]

Synonym: A2cp1_4347

Alternate gene names: 220919426

Gene position: 4838395-4839015 (Clockwise)

Preceding gene: 220919425

Following gene: 220919427

Centisome position: 96.2

GC content: 71.18

Gene sequence:

>621_bases
ATGAACAAGACCTCTCTTCGCCTCACCGCGGCCGTGACCGCGGTCCTGCTGTTCGCCGGTTGCCAGACGGCCGGCAAGCG
CACCGCCATCGGCGCCGGCGCGGGCGGCCTCGCGGGCGCGGGCGTGGGCGCCCTCCTCGGCGGCAAGAAGGGCGCGCTCA
TCGGCGCCGGCGTCGGCGCGCTCGCCGGCGGCTCGGTGGGCCTGTACCTCGACAAGCAGCACAAGGAGCTGGAGAAGATC
GCCGAGACCAAGCGGACCGAGAACGGCCTGCTGGTCGAGATGAAGGGCGACATCCTGTTCGACTCCGGCAGCTCCGCGCT
GAAGCCGGAGGCGATCTCCAAGCTCGAGCAGATGGGCGACGTCCTCGCCAAGTACGGCGACGACCGGATCCGCATCGAGG
GCTACACCGACGCGACCGGCTCGAAGTCGATGAACGAGGAGCTGTCGCTCCGCCGCGCCGACGCGGTGAAGCGCGTGCTC
GTCGGCCGCGGCGTGCAGGAGAAGCAGATCACCGCGCTCGGCATGGGTCCGGTGCGGCCGGTGGCGGACAACGGCACGTC
GGCGGGCCGCGCGCAGAACCGGCGCGTGGAGCTGCATATCGACGTGCCGAACGCGACTTGA

Upstream 100 bases:

>100_bases
CCCGCAGCGGGGGCGCGCGTCCGCGCTCCGCCGCCGGGCCCACGGCATCGAAGGCGCCGGGACCGGCGCGACACGACTTT
CATCCGGAAGGAAGGACCGC

Downstream 100 bases:

>100_bases
TCGTAACGAGGGCTGCGCCCTCGCCCCACGGAGCGCAGCTCCGTGGGGCCCCACTCCTGCTTCGCGGGGCCCGTGACCGC
TCGCGCCCGCTTTCGCGGGC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MNKTSLRLTAAVTAVLLFAGCQTAGKRTAIGAGAGGLAGAGVGALLGGKKGALIGAGVGALAGGSVGLYLDKQHKELEKI
AETKRTENGLLVEMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYTDATGSKSMNEELSLRRADAVKRVL
VGRGVQEKQITALGMGPVRPVADNGTSAGRAQNRRVELHIDVPNAT

Sequences:

>Translated_206_residues
MNKTSLRLTAAVTAVLLFAGCQTAGKRTAIGAGAGGLAGAGVGALLGGKKGALIGAGVGALAGGSVGLYLDKQHKELEKI
AETKRTENGLLVEMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYTDATGSKSMNEELSLRRADAVKRVL
VGRGVQEKQITALGMGPVRPVADNGTSAGRAQNRRVELHIDVPNAT
>Mature_206_residues
MNKTSLRLTAAVTAVLLFAGCQTAGKRTAIGAGAGGLAGAGVGALLGGKKGALIGAGVGALAGGSVGLYLDKQHKELEKI
AETKRTENGLLVEMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYTDATGSKSMNEELSLRRADAVKRVL
VGRGVQEKQITALGMGPVRPVADNGTSAGRAQNRRVELHIDVPNAT

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=217, Percent_Identity=40.5529953917051, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788957, Length=107, Percent_Identity=38.3177570093458, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=33.8983050847458, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21211; Mature: 21211

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTSLRLTAAVTAVLLFAGCQTAGKRTAIGAGAGGLAGAGVGALLGGKKGALIGAGVGA
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCHH
LAGGSVGLYLDKQHKELEKIAETKRTENGLLVEMKGDILFDSGSSALKPEAISKLEQMGD
HCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHH
VLAKYGDDRIRIEGYTDATGSKSMNEELSLRRADAVKRVLVGRGVQEKQITALGMGPVRP
HHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCC
VADNGTSAGRAQNRRVELHIDVPNAT
CCCCCCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MNKTSLRLTAAVTAVLLFAGCQTAGKRTAIGAGAGGLAGAGVGALLGGKKGALIGAGVGA
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCHH
LAGGSVGLYLDKQHKELEKIAETKRTENGLLVEMKGDILFDSGSSALKPEAISKLEQMGD
HCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHH
VLAKYGDDRIRIEGYTDATGSKSMNEELSLRRADAVKRVLVGRGVQEKQITALGMGPVRP
HHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCC
VADNGTSAGRAQNRRVELHIDVPNAT
CCCCCCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]