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The map label for this gene is hcpD [H]

Identifier: 220919346

GI number: 220919346

Start: 4751506

End: 4752627

Strand: Direct

Name: hcpD [H]

Synonym: A2cp1_4267

Alternate gene names: 220919346

Gene position: 4751506-4752627 (Clockwise)

Preceding gene: 220919345

Following gene: 220919350

Centisome position: 94.48

GC content: 83.16

Gene sequence:

>1122_bases
GTGCTCGCGCTCGCCGTCGCCCTGCTCGCTGCCGCCGCCGCCTCGGGCCCGCCCATGGCCTGCGAGCGGCTCGCCAGCCT
GTTCCCGAACGCTCCCCGCCCGCCGGGCGGGGAGCCGGGCTGCGCCGCGGCGCTCCGCGGGGCGTGCGACGCGGGGCGGC
GGCTCGCCTGCGCCGAGCTGGGGCGCGTGCTCGAGGCGGGCACCGCCGGGCCGGCGGATCCGGCCGGCGCCGCCGCGCTC
CACCGCCGCGCCTGCGACGCCGGGGTGGGGGCCGCCTGCGCGCGCCTCGCGCAGCACCTCCGCGAAGCGGGGCAGCCGGC
GCGCGCGGTGACCGAGGCGCTGGAGGAGGGTTGCGCGCTGGGCTCCGGGGCCGCCTGCCTGGAGCGCGCCGCGGCGGAGC
CGGACCCGGCGCGCGGGGTGCGGCTTCGCGAGCGCGCCTGCGATCTCGGCGAGGCGGAGGGCTGCCTCGCGATCGTCGCC
GGCGCGCCGCCCGCCCGCGCGCAGGCGCTGCGGGATCGCGCCTGCTGGCTCGGCTCGGCCGACGGCTGCGCGGCCGCCGG
GGCGGGGCTCGCCCGCGGCGACGCGGGGCCGGAGGATCCCGTCGCGGCGCGGCTGCGGCTCGAGCGCGGCTGCGAGCTGG
GGGGCGCCGAGGCGTGCGCGCGGCTCGGGCTGGTGCTGCTCGCGGAGGGGCGGCGCGGCGAGGCGGCGCGCGGCGCGCGG
CTGCTGGTGGAGGGGTGCCCGGCGCTCGGCGCGGAGGAGTGCCTGGACTCGGCCGAGGCCTGGCTGAAGGGCCCGCAGGC
GGTGATCGACGAGGGCTCGGACCCGGCGCTGCTCGACCTCGCCTGCCGGCGGAAGGTCCCGGACGCCTGCGCGTGGCTGG
GGCGGATGGTGCAGGAGGGCCGGCGCCTGCCGGCGGACGGCCCGCGCGCCGCCGACCTGTACCGCCGCGCCTGCGAGGCG
GGCCGCGCCGGCGCCTGCTCGGACCTGGGCGTGCTCTACCGGTTCGGCGCCGGCGTCCCGCGCGACGAGGCGCGCGCCGG
GGCGCTGTTCGCCGGCGCCTGCGCCCGGGGCGTCGAGCGCGCCTGCGCGCTCCGCGACGATCCCTCGCGGCCGATCGACT
GA

Upstream 100 bases:

>100_bases
CGCCGCGGCGGTGCAGGCGTGCGAGCGGGCGATGCCGCGCCGCCGCTGATCGCCCCGCGCGATCGTCGTCGCCGCGCCGG
ACCCCTGCTATCGTCCGGCC

Downstream 100 bases:

>100_bases
CCGGCGCGGGATCAGCTCGCGAGCGCGCGCGGGCCCTGCGCGCCGCCCAGCGCGGCGACCTCGATCGGCCCCGCGGCCTC
GAGGCCGTCGGCGCGGAGCT

Product: Sel1 domain-containing protein repeat-containing protein

Products: NA

Alternate protein names: Cysteine-rich protein D; Penicillin-binding protein 4; PBP 4 [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLALAVALLAAAAASGPPMACERLASLFPNAPRPPGGEPGCAAALRGACDAGRRLACAELGRVLEAGTAGPADPAGAAAL
HRRACDAGVGAACARLAQHLREAGQPARAVTEALEEGCALGSGAACLERAAAEPDPARGVRLRERACDLGEAEGCLAIVA
GAPPARAQALRDRACWLGSADGCAAAGAGLARGDAGPEDPVAARLRLERGCELGGAEACARLGLVLLAEGRRGEAARGAR
LLVEGCPALGAEECLDSAEAWLKGPQAVIDEGSDPALLDLACRRKVPDACAWLGRMVQEGRRLPADGPRAADLYRRACEA
GRAGACSDLGVLYRFGAGVPRDEARAGALFAGACARGVERACALRDDPSRPID

Sequences:

>Translated_373_residues
MLALAVALLAAAAASGPPMACERLASLFPNAPRPPGGEPGCAAALRGACDAGRRLACAELGRVLEAGTAGPADPAGAAAL
HRRACDAGVGAACARLAQHLREAGQPARAVTEALEEGCALGSGAACLERAAAEPDPARGVRLRERACDLGEAEGCLAIVA
GAPPARAQALRDRACWLGSADGCAAAGAGLARGDAGPEDPVAARLRLERGCELGGAEACARLGLVLLAEGRRGEAARGAR
LLVEGCPALGAEECLDSAEAWLKGPQAVIDEGSDPALLDLACRRKVPDACAWLGRMVQEGRRLPADGPRAADLYRRACEA
GRAGACSDLGVLYRFGAGVPRDEARAGALFAGACARGVERACALRDDPSRPID
>Mature_373_residues
MLALAVALLAAAAASGPPMACERLASLFPNAPRPPGGEPGCAAALRGACDAGRRLACAELGRVLEAGTAGPADPAGAAAL
HRRACDAGVGAACARLAQHLREAGQPARAVTEALEEGCALGSGAACLERAAAEPDPARGVRLRERACDLGEAEGCLAIVA
GAPPARAQALRDRACWLGSADGCAAAGAGLARGDAGPEDPVAARLRLERGCELGGAEACARLGLVLLAEGRRGEAARGAR
LLVEGCPALGAEECLDSAEAWLKGPQAVIDEGSDPALLDLACRRKVPDACAWLGRMVQEGRRLPADGPRAADLYRRACEA
GRAGACSDLGVLYRFGAGVPRDEARAGALFAGACARGVERACALRDDPSRPID

Specific function: May hydrolyze 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives. Binds to penicillin [H]

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: =3.5.2.6 [H]

Molecular weight: Translated: 37607; Mature: 37607

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALAVALLAAAAASGPPMACERLASLFPNAPRPPGGEPGCAAALRGACDAGRRLACAEL
CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
GRVLEAGTAGPADPAGAAALHRRACDAGVGAACARLAQHLREAGQPARAVTEALEEGCAL
HHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
GSGAACLERAAAEPDPARGVRLRERACDLGEAEGCLAIVAGAPPARAQALRDRACWLGSA
CCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC
DGCAAAGAGLARGDAGPEDPVAARLRLERGCELGGAEACARLGLVLLAEGRRGEAARGAR
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHEECCCCCCHHHHHH
LLVEGCPALGAEECLDSAEAWLKGPQAVIDEGSDPALLDLACRRKVPDACAWLGRMVQEG
HHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHC
RRLPADGPRAADLYRRACEAGRAGACSDLGVLYRFGAGVPRDEARAGALFAGACARGVER
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ACALRDDPSRPID
HHHCCCCCCCCCC
>Mature Secondary Structure
MLALAVALLAAAAASGPPMACERLASLFPNAPRPPGGEPGCAAALRGACDAGRRLACAEL
CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
GRVLEAGTAGPADPAGAAALHRRACDAGVGAACARLAQHLREAGQPARAVTEALEEGCAL
HHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
GSGAACLERAAAEPDPARGVRLRERACDLGEAEGCLAIVAGAPPARAQALRDRACWLGSA
CCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC
DGCAAAGAGLARGDAGPEDPVAARLRLERGCELGGAEACARLGLVLLAEGRRGEAARGAR
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHEECCCCCCHHHHHH
LLVEGCPALGAEECLDSAEAWLKGPQAVIDEGSDPALLDLACRRKVPDACAWLGRMVQEG
HHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHC
RRLPADGPRAADLYRRACEAGRAGACSDLGVLYRFGAGVPRDEARAGALFAGACARGVER
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ACALRDDPSRPID
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185; 10438788 [H]