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The map label for this gene is yjdF [H]

Identifier: 220919220

GI number: 220919220

Start: 4627917

End: 4628564

Strand: Direct

Name: yjdF [H]

Synonym: A2cp1_4141

Alternate gene names: 220919220

Gene position: 4627917-4628564 (Clockwise)

Preceding gene: 220919219

Following gene: 220919221

Centisome position: 92.02

GC content: 75.46

Gene sequence:

>648_bases
ATGACGGATCGCCTCCCCGCCGCGCTGCTCGCGCTCGTCGCCACCGTCCTGGCCTGGTCCGGCATCGGCCCGAAGGACCG
GGGCACCTGGCTCATGGAGGTCGCGCCGGTGCTCGTCGTCGTCCCGGTGCTCGTCGCGACCCGGCGGCGCTTCCCGCTCA
CCCCGCTCCTGTACGTGCTCGTCGCGCTCCACGCCGCGGTGCTGTGCGTGGGCGGCCACTACACCTACGCCGAGGTGCCG
GCCGGCTTCTGGGTGCGCGACGCGCTCGGCCTGGCCCGGAACCACTACGATCGCCTCGGCCACCTCATGCAGGGCTTCGT
GCCCGCGCTGGCGGTGCGCGAGCTGCTCCTGCGAACCTCGCCGCTGCGGCGCGGGCGCTGGCTGACGGCGCTCGTCACCT
GCGTCGCGCTCGCCATCTCCGCGGCCTACGAGCTGGTGGAGTGGCTGGCGGCGGTGCTGCTCGGCCAAGGCGCGGACGCG
TTCCTCGGGACGCAGGGGGATCCGTGGGACACGCAGTGGGACATGTTCCTGGCGCTGGTGGGCGCGGTGGCGGCGCAGGC
GCTCCTGTCGCGCGTGCACGACCGGGCCCTCGCGCGCCTCGGCGCGAGCCCGGACGGCCGTCGCCCCGGCGATCGGATGG
CGGCGTGA

Upstream 100 bases:

>100_bases
TCGCGCTCATGGCGGAGCAGGCGCGCGCGCTGGGATTCGCGCCCGCCGGCGATGTTTCGGGTATGGTCGACGGCTCCCTG
CTGCAGGAGCTGTCTGCCCG

Downstream 100 bases:

>100_bases
GGCTGCGCGCCCTCGCGATCGCCGGCCTCGCCGCGCTCGCCTCCGGCTGCGCCGCGACGCGGCCGCTGCCCGCGCCCGCG
CCCGCGCCCGCGCCCGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTDRLPAALLALVATVLAWSGIGPKDRGTWLMEVAPVLVVVPVLVATRRRFPLTPLLYVLVALHAAVLCVGGHYTYAEVP
AGFWVRDALGLARNHYDRLGHLMQGFVPALAVRELLLRTSPLRRGRWLTALVTCVALAISAAYELVEWLAAVLLGQGADA
FLGTQGDPWDTQWDMFLALVGAVAAQALLSRVHDRALARLGASPDGRRPGDRMAA

Sequences:

>Translated_215_residues
MTDRLPAALLALVATVLAWSGIGPKDRGTWLMEVAPVLVVVPVLVATRRRFPLTPLLYVLVALHAAVLCVGGHYTYAEVP
AGFWVRDALGLARNHYDRLGHLMQGFVPALAVRELLLRTSPLRRGRWLTALVTCVALAISAAYELVEWLAAVLLGQGADA
FLGTQGDPWDTQWDMFLALVGAVAAQALLSRVHDRALARLGASPDGRRPGDRMAA
>Mature_214_residues
TDRLPAALLALVATVLAWSGIGPKDRGTWLMEVAPVLVVVPVLVATRRRFPLTPLLYVLVALHAAVLCVGGHYTYAEVPA
GFWVRDALGLARNHYDRLGHLMQGFVPALAVRELLLRTSPLRRGRWLTALVTCVALAISAAYELVEWLAAVLLGQGADAF
LGTQGDPWDTQWDMFLALVGAVAAQALLSRVHDRALARLGASPDGRRPGDRMAA

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=186, Percent_Identity=59.6774193548387, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 23204; Mature: 23072

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRLPAALLALVATVLAWSGIGPKDRGTWLMEVAPVLVVVPVLVATRRRFPLTPLLYVL
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VALHAAVLCVGGHYTYAEVPAGFWVRDALGLARNHYDRLGHLMQGFVPALAVRELLLRTS
HHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PLRRGRWLTALVTCVALAISAAYELVEWLAAVLLGQGADAFLGTQGDPWDTQWDMFLALV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHH
GAVAAQALLSRVHDRALARLGASPDGRRPGDRMAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDRLPAALLALVATVLAWSGIGPKDRGTWLMEVAPVLVVVPVLVATRRRFPLTPLLYVL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VALHAAVLCVGGHYTYAEVPAGFWVRDALGLARNHYDRLGHLMQGFVPALAVRELLLRTS
HHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PLRRGRWLTALVTCVALAISAAYELVEWLAAVLLGQGADAFLGTQGDPWDTQWDMFLALV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHH
GAVAAQALLSRVHDRALARLGASPDGRRPGDRMAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]