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The map label for this gene is yhdW [H]

Identifier: 220919208

GI number: 220919208

Start: 4614274

End: 4615104

Strand: Direct

Name: yhdW [H]

Synonym: A2cp1_4128

Alternate gene names: 220919208

Gene position: 4614274-4615104 (Clockwise)

Preceding gene: 220919206

Following gene: 220919209

Centisome position: 91.75

GC content: 75.21

Gene sequence:

>831_bases
GTGACCGCTCTCAGCCCTCCCTCGCCGGACCGCGCGCCCGCGCGCGCCTACCTCTCCCGCCCCGGCCCGTGGCTGGTGGC
CCACCGCGGCGGCAGCGCGCTCGCCCCGGAGAACACGCTCGTCGCGTTCGACCGGGCGGTCGCCCTCGGCGCGGACGCGC
TCGAGATCGACGTGCGCCGCACCGCCGACGGCGCGGTGGTGGTGTTCCACGACGACGACACCGCGCGCCTCACCGGCGTG
CCGGGGACCATCGAGGCGCGGACGCTCGAGGAGGTGGGGCGGCTCGACGCGGCGTTCGGGTTCACGCCGGACGGGGGGGC
GACGCGGCCGCTCCGTGGGAAGGGGGTGCGGGTGCCGACGCTGGCGGAGGTGCTGGCGCGGTATCCGGGGCTGCGGCTGA
ACATCGACGCGAAGCCGGACGAGGCCGCGCTGGCGGAGGCGCTGGCGCGGGAGATCCGGGCCGCGGGGGCGGAGGACCGC
GTGTGCGTCGGGTCGTTCTTCGACGCGCAGGCGGAGCGGCTCGCGCCGCTGTTGCCCGGGTGCGCGCGGTACCTGCCGGA
GCAGGCGGCGACGTGCCACGTGATGGCGGCGCTGTCGGGGCAGGCGGCGGAGGGGTGTCCATCCGGCTACGACGTCGCGG
ATCTGCCGCATCGGATGGGGGAGATCGAGGTGGTGTGCCCGAAGGTCGTCGAGCACTTCCACGGGCTGGGGATTCCGGTG
CACGTGTGGACGGTGGACGATCCGGTCGAGATGGGGGAGCTGCTCGCGCTCGGGGTGGATGGGATCGTCACCGATCGGCC
GGATCTGTTGGCGAGGGTGTTGGGGAGGTAG

Upstream 100 bases:

>100_bases
CCTTCGCATGGCGAGGTTCTAACCCGGCGGCGCCGCGGGCGGAACCTCGGGGCACGCCCGAGGCGTTGACGGGGGCGGCG
GGGCGGAAGAAGGTCGGCGG

Downstream 100 bases:

>100_bases
CTCCCGGTAGATGGGCTGCGGGGCTGCTGGGTTGACCGGAAGAGGAGCTGGAAGTGGGCAGCGGGCCGGCGGGGCGGGCC
TTGTTGGCCGCGAGCGGCGG

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MTALSPPSPDRAPARAYLSRPGPWLVAHRGGSALAPENTLVAFDRAVALGADALEIDVRRTADGAVVVFHDDDTARLTGV
PGTIEARTLEEVGRLDAAFGFTPDGGATRPLRGKGVRVPTLAEVLARYPGLRLNIDAKPDEAALAEALAREIRAAGAEDR
VCVGSFFDAQAERLAPLLPGCARYLPEQAATCHVMAALSGQAAEGCPSGYDVADLPHRMGEIEVVCPKVVEHFHGLGIPV
HVWTVDDPVEMGELLALGVDGIVTDRPDLLARVLGR

Sequences:

>Translated_276_residues
MTALSPPSPDRAPARAYLSRPGPWLVAHRGGSALAPENTLVAFDRAVALGADALEIDVRRTADGAVVVFHDDDTARLTGV
PGTIEARTLEEVGRLDAAFGFTPDGGATRPLRGKGVRVPTLAEVLARYPGLRLNIDAKPDEAALAEALAREIRAAGAEDR
VCVGSFFDAQAERLAPLLPGCARYLPEQAATCHVMAALSGQAAEGCPSGYDVADLPHRMGEIEVVCPKVVEHFHGLGIPV
HVWTVDDPVEMGELLALGVDGIVTDRPDLLARVLGR
>Mature_275_residues
TALSPPSPDRAPARAYLSRPGPWLVAHRGGSALAPENTLVAFDRAVALGADALEIDVRRTADGAVVVFHDDDTARLTGVP
GTIEARTLEEVGRLDAAFGFTPDGGATRPLRGKGVRVPTLAEVLARYPGLRLNIDAKPDEAALAEALAREIRAAGAEDRV
CVGSFFDAQAERLAPLLPGCARYLPEQAATCHVMAALSGQAAEGCPSGYDVADLPHRMGEIEVVCPKVVEHFHGLGIPVH
VWTVDDPVEMGELLALGVDGIVTDRPDLLARVLGR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763876, Length=273, Percent_Identity=27.1062271062271, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI260763878, Length=144, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI260763880, Length=144, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI1789858, Length=262, Percent_Identity=29.0076335877863, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17542344, Length=269, Percent_Identity=27.5092936802974, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17561436, Length=141, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6325050, Length=269, Percent_Identity=26.7657992565056, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29081; Mature: 28950

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSPPSPDRAPARAYLSRPGPWLVAHRGGSALAPENTLVAFDRAVALGADALEIDVRR
CCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEHHHHHCCCCEEEEEEEE
TADGAVVVFHDDDTARLTGVPGTIEARTLEEVGRLDAAFGFTPDGGATRPLRGKGVRVPT
CCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
LAEVLARYPGLRLNIDAKPDEAALAEALAREIRAAGAEDRVCVGSFFDAQAERLAPLLPG
HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHH
CARYLPEQAATCHVMAALSGQAAEGCPSGYDVADLPHRMGEIEVVCPKVVEHFHGLGIPV
HHHHCHHHHHHEEEEEHHCCCCCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHCCCCEE
HVWTVDDPVEMGELLALGVDGIVTDRPDLLARVLGR
EEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TALSPPSPDRAPARAYLSRPGPWLVAHRGGSALAPENTLVAFDRAVALGADALEIDVRR
CCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEHHHHHCCCCEEEEEEEE
TADGAVVVFHDDDTARLTGVPGTIEARTLEEVGRLDAAFGFTPDGGATRPLRGKGVRVPT
CCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
LAEVLARYPGLRLNIDAKPDEAALAEALAREIRAAGAEDRVCVGSFFDAQAERLAPLLPG
HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHH
CARYLPEQAATCHVMAALSGQAAEGCPSGYDVADLPHRMGEIEVVCPKVVEHFHGLGIPV
HHHHCHHHHHHEEEEEHHCCCCCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHCCCCEE
HVWTVDDPVEMGELLALGVDGIVTDRPDLLARVLGR
EEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]