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The map label for this gene is ligT [C]

Identifier: 220919183

GI number: 220919183

Start: 4588984

End: 4589568

Strand: Direct

Name: ligT [C]

Synonym: A2cp1_4103

Alternate gene names: 220919183

Gene position: 4588984-4589568 (Clockwise)

Preceding gene: 220919182

Following gene: 220919186

Centisome position: 91.24

GC content: 81.54

Gene sequence:

>585_bases
GTGGTCACCCGCCGCCTGTTCGTGGCCCTCGAGCCCGCCGACGCCGTGCGACGCCGCATCGGCGCCGCGTCGGACGCGCT
CCGCGCGGCGGCCGGGCGCGCGGCCGGCGACGTCCGCTGGGTGGCGCCCGACGGCGTGCACCTGACCTTGCAGTTCCTGG
GGGCGGTGCCCGAGGAGCGGGTGGAGGCGGTGCGCGCCGCGGTCGAGGCGGCCGCCGCCGGCGCCCGGCCCATGGCGCTC
GAGGTGAGCGGCGCGGGCGGCTTCCCCAACGCGCGCCGCCCGCGGGTGGTCTGGCTCGGGCTCGGCGGCGACGTGGCCGC
GCTGTCGGCGCTGGTGGCCGACCTCGGCGCCCGGCTCGCGCCGCTCGGCTTCGCGCCCGAGTCGCGCCCGTTCTCGCCGC
ACCTCACGCTGGGCCGCGCGCGGGATCCGCGCGGCGCCCCGGGGCTCGGCGGCGCGCTCGCCGCGCAGGCGCACGCCGAC
GGCTTCGGCTGGCGCGCGACCGAGCTGGTGCTGTTCGAATCGCACCTCTCGCCGAGGGGCGCCCGCTACGAGGCCGTGCT
GCGCGCCCCGCTCGGCGGCGGGTAG

Upstream 100 bases:

>100_bases
AGCCGCGGAACCTCGCGAAGAGCGTGACGGTCGAGTAGCGCGCGGGCCCGCGCCCGCGCCGGACCTCGCGCGCGGCGCGC
GGGTGCGGTAGACCTCGGCC

Downstream 100 bases:

>100_bases
TCGCTCCCGCGACTCCGCGCGGCCGCGCTGCGCTCGGGATGAGCGGGAGGGAGCCGGGCCGCCGCCCTACCCCGTCCGGC
GCCGCGTCAGCTCCTTCAGC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MVTRRLFVALEPADAVRRRIGAASDALRAAAGRAAGDVRWVAPDGVHLTLQFLGAVPEERVEAVRAAVEAAAAGARPMAL
EVSGAGGFPNARRPRVVWLGLGGDVAALSALVADLGARLAPLGFAPESRPFSPHLTLGRARDPRGAPGLGGALAAQAHAD
GFGWRATELVLFESHLSPRGARYEAVLRAPLGGG

Sequences:

>Translated_194_residues
MVTRRLFVALEPADAVRRRIGAASDALRAAAGRAAGDVRWVAPDGVHLTLQFLGAVPEERVEAVRAAVEAAAAGARPMAL
EVSGAGGFPNARRPRVVWLGLGGDVAALSALVADLGARLAPLGFAPESRPFSPHLTLGRARDPRGAPGLGGALAAQAHAD
GFGWRATELVLFESHLSPRGARYEAVLRAPLGGG
>Mature_194_residues
MVTRRLFVALEPADAVRRRIGAASDALRAAAGRAAGDVRWVAPDGVHLTLQFLGAVPEERVEAVRAAVEAAAAGARPMAL
EVSGAGGFPNARRPRVVWLGLGGDVAALSALVADLGARLAPLGFAPESRPFSPHLTLGRARDPRGAPGLGGALAAQAHAD
GFGWRATELVLFESHLSPRGARYEAVLRAPLGGG

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19942; Mature: 19942

Theoretical pI: Translated: 11.68; Mature: 11.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTRRLFVALEPADAVRRRIGAASDALRAAAGRAAGDVRWVAPDGVHLTLQFLGAVPEER
CCCCEEEEEECCHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCEEEEHHHCCCCHHH
VEAVRAAVEAAAAGARPMALEVSGAGGFPNARRPRVVWLGLGGDVAALSALVADLGARLA
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
PLGFAPESRPFSPHLTLGRARDPRGAPGLGGALAAQAHADGFGWRATELVLFESHLSPRG
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCC
ARYEAVLRAPLGGG
CCEEEEEECCCCCC
>Mature Secondary Structure
MVTRRLFVALEPADAVRRRIGAASDALRAAAGRAAGDVRWVAPDGVHLTLQFLGAVPEER
CCCCEEEEEECCHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCEEEEHHHCCCCHHH
VEAVRAAVEAAAAGARPMALEVSGAGGFPNARRPRVVWLGLGGDVAALSALVADLGARLA
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
PLGFAPESRPFSPHLTLGRARDPRGAPGLGGALAAQAHADGFGWRATELVLFESHLSPRG
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCC
ARYEAVLRAPLGGG
CCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]