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The map label for this gene is ydaL [H]

Identifier: 220919163

GI number: 220919163

Start: 4563619

End: 4564284

Strand: Direct

Name: ydaL [H]

Synonym: A2cp1_4083

Alternate gene names: 220919163

Gene position: 4563619-4564284 (Clockwise)

Preceding gene: 220919156

Following gene: 220919164

Centisome position: 90.74

GC content: 77.18

Gene sequence:

>666_bases
GTGGCGAAGCGGCCGTTCAACGAGGGTTTGCAGAAGCTGAAGGCGCTCTCTCCTCCCCGTGAGGAGCGGCCCCAGAAGCC
CGTACGCCCTCCCCCGCCGCCGCCCCCCGCGCCGCCCGCGGAGCCGAGCGAGTCCGAGCTGTGGGCGCAGGCGACGCGCG
GCGCGCGCCCGGTCGAGCGCGGGCCCGACACCGTGGCGCCGCCCGCGCCCCGCGGCGCCCCCGGCGCCCACTGGCACCCG
GACCTCGAGGCCATCGACGCGCTCCGCGCCCTGGTCTCGGGGGAGGCGCCCTTCGACCTCTCCGACTCCGACGAGTACAT
CGAGGGCCGGGTGGCCGGGCTCGACCAGTCGGTGGTCCGCAAGCTCCGCCGCGGCGAGTTCGCGGTGCAGGGCCACGTGG
ACCTGCACGGTCTGACGCGCGCCGAGGCGAAGCAGGCGGTGGACGCGTACCTGCGCGGCGCGCGGCAGGCGGGCAAGCGC
TGCGTCCTGGTGGTCCACGGCCGCGGGCTGCACTCCAAGGACCAGCTCCCGGTGCTGAAGGACGCGCTCAGGAGCTGGCT
CGCCTCGGCGCGCTTCGCGCGGCACGTGCTGGCGTTCGCGACCGCGCGGCCGGTGGATGGCGGGGCGGGGGCGCTCTACG
TGCTGCTGCGCCGGCCCGGGCGATAG

Upstream 100 bases:

>100_bases
GCGACGCCCCGCCGCCGGGATCGACGAAGATCGTCACCAGCTCGCCGCAGTACGGGCACTCGATCTCGATGTCCAAGGTG
CCCCCCGTTATAGTCGCGGC

Downstream 100 bases:

>100_bases
CGCGCAGCCCCGAGCGTTGGAGCCCGGGTCGGGCGGGAGGATTCGCCCCAGCCTGCCCGGGACGTTGCGGAAACCTTTGG
GTGGCGCGTTGGCTCTGAGC

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAKRPFNEGLQKLKALSPPREERPQKPVRPPPPPPPAPPAEPSESELWAQATRGARPVERGPDTVAPPAPRGAPGAHWHP
DLEAIDALRALVSGEAPFDLSDSDEYIEGRVAGLDQSVVRKLRRGEFAVQGHVDLHGLTRAEAKQAVDAYLRGARQAGKR
CVLVVHGRGLHSKDQLPVLKDALRSWLASARFARHVLAFATARPVDGGAGALYVLLRRPGR

Sequences:

>Translated_221_residues
MAKRPFNEGLQKLKALSPPREERPQKPVRPPPPPPPAPPAEPSESELWAQATRGARPVERGPDTVAPPAPRGAPGAHWHP
DLEAIDALRALVSGEAPFDLSDSDEYIEGRVAGLDQSVVRKLRRGEFAVQGHVDLHGLTRAEAKQAVDAYLRGARQAGKR
CVLVVHGRGLHSKDQLPVLKDALRSWLASARFARHVLAFATARPVDGGAGALYVLLRRPGR
>Mature_220_residues
AKRPFNEGLQKLKALSPPREERPQKPVRPPPPPPPAPPAEPSESELWAQATRGARPVERGPDTVAPPAPRGAPGAHWHPD
LEAIDALRALVSGEAPFDLSDSDEYIEGRVAGLDQSVVRKLRRGEFAVQGHVDLHGLTRAEAKQAVDAYLRGARQAGKRC
VLVVHGRGLHSKDQLPVLKDALRSWLASARFARHVLAFATARPVDGGAGALYVLLRRPGR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=186, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1788671, Length=131, Percent_Identity=33.587786259542, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 23927; Mature: 23795

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRPFNEGLQKLKALSPPREERPQKPVRPPPPPPPAPPAEPSESELWAQATRGARPVER
CCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
GPDTVAPPAPRGAPGAHWHPDLEAIDALRALVSGEAPFDLSDSDEYIEGRVAGLDQSVVR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHH
KLRRGEFAVQGHVDLHGLTRAEAKQAVDAYLRGARQAGKRCVLVVHGRGLHSKDQLPVLK
HHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHH
DALRSWLASARFARHVLAFATARPVDGGAGALYVLLRRPGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
AKRPFNEGLQKLKALSPPREERPQKPVRPPPPPPPAPPAEPSESELWAQATRGARPVER
CCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
GPDTVAPPAPRGAPGAHWHPDLEAIDALRALVSGEAPFDLSDSDEYIEGRVAGLDQSVVR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHH
KLRRGEFAVQGHVDLHGLTRAEAKQAVDAYLRGARQAGKRCVLVVHGRGLHSKDQLPVLK
HHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHH
DALRSWLASARFARHVLAFATARPVDGGAGALYVLLRRPGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]