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The map label for this gene is arnC [H]

Identifier: 220918596

GI number: 220918596

Start: 3918580

End: 3919293

Strand: Reverse

Name: arnC [H]

Synonym: A2cp1_3504

Alternate gene names: 220918596

Gene position: 3919293-3918580 (Counterclockwise)

Preceding gene: 220918597

Following gene: 220918595

Centisome position: 77.93

GC content: 68.77

Gene sequence:

>714_bases
ATGGATCCCACGCTCACCGTCATCGTCCCGGTCTTCGACGAGGAGGACAACCTCGAGCGCGTCGGTCGCGAGCTGACCGC
GTACCTCGACCGCACCTCCACGCCGGCGCAGATCCTGTTCGTGAACGACGGCTCGCGCGACCGCAGCGGCCAGATGATCG
AGGCGCTCTGCGCCGCGGACCCGCGCTTCCACTTCGTCCACCTGGCGCGCAACTCCGGCCTGAGCGCCGCGCTCAAGGCC
GGCTTCGATCACGTGGAGACGCGCTGGGCCGGCTACATCGACTCCGACCTGCAGACCTCGCCCGACGACTTCGACCTGCT
CATGCCGTTCGCGGCCGAGTACGAGCTCGTCACCGGGGTCCGGGTGAAGCGCAAGGACACGCTGGTGAAGAAGCTGTCCT
CGCGGATCGCCAACGCCATCCGGCGCTCGTTCACCCACGACGGCGCCAGCGACACCGGCTGCCCGCTCAAGGTGATCCGC
GCCGACGTGGCCCGCCGCATCCCGTTCTTCAAGGGGATGCACCGCTTCCTCCCGGCGCTGGTGCAGCTCGACGGCGGCAA
GGTGAAGGAGGTGCCGGTGCGCCACTTCCCGCGCGTCGCCGGCGAGTCGAAGTACCACCTCTGGAACCGGCTGCTCGGCC
CCACCGCCGACCTGTTCGCCTACCGCTGGATGCGGAGCCGCTACATCCGCTACGAGATCGCGAAAAAGGGATGA

Upstream 100 bases:

>100_bases
GCCGCCCGCCCCGGCGAGGCCGCCGCGCCCGCGGGGGAGCCGGGCGCGCGCGCCTCGGCCGATCGCCGGTAGCCCGCCCC
GTCCCCGGAAGCCGAGGCCC

Downstream 100 bases:

>100_bases
CCGCGAGCCACCTCTGGATCTTCGCCGTCGGGTTCACCGCCCAGATCCTGTTCGCCGCCAGGATGCTGGTGCAGTGGTTC
CACTCCGAGAAGGCCGGCAA

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MDPTLTVIVPVFDEEDNLERVGRELTAYLDRTSTPAQILFVNDGSRDRSGQMIEALCAADPRFHFVHLARNSGLSAALKA
GFDHVETRWAGYIDSDLQTSPDDFDLLMPFAAEYELVTGVRVKRKDTLVKKLSSRIANAIRRSFTHDGASDTGCPLKVIR
ADVARRIPFFKGMHRFLPALVQLDGGKVKEVPVRHFPRVAGESKYHLWNRLLGPTADLFAYRWMRSRYIRYEIAKKG

Sequences:

>Translated_237_residues
MDPTLTVIVPVFDEEDNLERVGRELTAYLDRTSTPAQILFVNDGSRDRSGQMIEALCAADPRFHFVHLARNSGLSAALKA
GFDHVETRWAGYIDSDLQTSPDDFDLLMPFAAEYELVTGVRVKRKDTLVKKLSSRIANAIRRSFTHDGASDTGCPLKVIR
ADVARRIPFFKGMHRFLPALVQLDGGKVKEVPVRHFPRVAGESKYHLWNRLLGPTADLFAYRWMRSRYIRYEIAKKG
>Mature_237_residues
MDPTLTVIVPVFDEEDNLERVGRELTAYLDRTSTPAQILFVNDGSRDRSGQMIEALCAADPRFHFVHLARNSGLSAALKA
GFDHVETRWAGYIDSDLQTSPDDFDLLMPFAAEYELVTGVRVKRKDTLVKKLSSRIANAIRRSFTHDGASDTGCPLKVIR
ADVARRIPFFKGMHRFLPALVQLDGGKVKEVPVRHFPRVAGESKYHLWNRLLGPTADLFAYRWMRSRYIRYEIAKKG

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=216, Percent_Identity=31.4814814814815, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788692, Length=213, Percent_Identity=26.2910798122066, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787259, Length=150, Percent_Identity=29.3333333333333, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26880; Mature: 26880

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPTLTVIVPVFDEEDNLERVGRELTAYLDRTSTPAQILFVNDGSRDRSGQMIEALCAAD
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCC
PRFHFVHLARNSGLSAALKAGFDHVETRWAGYIDSDLQTSPDDFDLLMPFAAEYELVTGV
CCEEEEEEECCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
RVKRKDTLVKKLSSRIANAIRRSFTHDGASDTGCPLKVIRADVARRIPFFKGMHRFLPAL
EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
VQLDGGKVKEVPVRHFPRVAGESKYHLWNRLLGPTADLFAYRWMRSRYIRYEIAKKG
HHCCCCCEECCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCC
>Mature Secondary Structure
MDPTLTVIVPVFDEEDNLERVGRELTAYLDRTSTPAQILFVNDGSRDRSGQMIEALCAAD
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCC
PRFHFVHLARNSGLSAALKAGFDHVETRWAGYIDSDLQTSPDDFDLLMPFAAEYELVTGV
CCEEEEEEECCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
RVKRKDTLVKKLSSRIANAIRRSFTHDGASDTGCPLKVIRADVARRIPFFKGMHRFLPAL
EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
VQLDGGKVKEVPVRHFPRVAGESKYHLWNRLLGPTADLFAYRWMRSRYIRYEIAKKG
HHCCCCCEECCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA