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The map label for this gene is yncB [H]

Identifier: 220918483

GI number: 220918483

Start: 3778275

End: 3779300

Strand: Direct

Name: yncB [H]

Synonym: A2cp1_3389

Alternate gene names: 220918483

Gene position: 3778275-3779300 (Clockwise)

Preceding gene: 220918482

Following gene: 220918487

Centisome position: 75.12

GC content: 73.49

Gene sequence:

>1026_bases
ATGTCGAGCCCCTCCGTCAACCGCCGCATCGTGCTCGCCGCTCGCCCGCGCGGCGCGCCGACGGCGCAGGATTTCCGCCT
CGAGCAGGTCCCGGTGACGGCCCCCGCGGACGGGCAGGTGCTGCTTCGCACGGTGTACCTGTCGCTCGACCCGTACATGC
GGGGCCGCATGAGCGAGGGCCCCTCCTACGTGCCGCCGCTGGCGCTCGGGGAGACGATGGGGGGTGGCACGGTGAGTCGC
GTGGTCGCCTCCAGGCACCCGGGATTCCGCGAGGGCGAGCTGGTGCTCGGGGCCACCGGCTGGCAGGACTACGCGCTCTC
CGACGGCGAGGGGCTGATGCCGGTCCGCGACACCGCGCATCCTTCCTACGCCCTGAGCGTGCTCGGCATGCCCGGCTTCA
CCGCGTACCACGGGCTCCTGAACATCGGCCAGCCGAGGCCCGGCGAGACCGTGGTCGTGGCCGCGGCGAGCGGCGCGGTC
GGCGCCGTCGTGGGCCAGATCGCCAGGATCCGGGGCGCGCGCGTGATCGGCGTCGCCGGCGGCGCCGAGAAGCGCCGGTA
CGTGACCGAGCAGCTCGGCTTCGACGCCTGCCTCGATCGCCGCGACCCGCACCTCGCGCAGCAGCTCGCCGAGGCCTGCC
CCGACGGCATCGACGTCTACTTCGAGAACGTCGGCGGCGCGGTGCTCGACGCCGTGCTGCCGCTCCTCCGCGAGGGCGCG
CGCGTCCCGGTGTGCGGGGGGATCGCGCACTACAACGACGAGGCGCCGCCGCCCGGGCCGGACCGCCTGCCGATGCTGAT
GGCGCTCGTGCTCCGCAAGCGCCTCCGCCTGCAGGGCTTCATCATCCTCGACCACTACGCCGACGGCTACGCGCCCTTCC
TGCGCGACATGAGCGCATGGGTCGCCGAGGGCAAGGTGAAGCTCCGCGAGGACGTGGTCGTCGGGCTGGAGAACGCGCCG
GCGGCGTTGATGGGCCTGCTGGAGGGCAAGAACTTCGGCAAGGTCGTCGTCCGCGTCGCGGATTGA

Upstream 100 bases:

>100_bases
TATCCGGGCCCGTCGGTTCCGGGAGCGGTGGCGAGCGTCCGCGCGCCTCGAAGCCGGATCCCGCGTCACACCCCTCCGTC
CCGCCTCCGGGAGATTCGCC

Downstream 100 bases:

>100_bases
CGCGGGGTCCGGTGCGGTGGGGACGGGCGAGCGCGGCAGCCCCGGCATCGGCGGGGTCACGTCGCCGTCGCCGTCCCTCC
ACCTCACCCGGGCATCACGC

Product: alcohol dehydrogenase zinc-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSSPSVNRRIVLAARPRGAPTAQDFRLEQVPVTAPADGQVLLRTVYLSLDPYMRGRMSEGPSYVPPLALGETMGGGTVSR
VVASRHPGFREGELVLGATGWQDYALSDGEGLMPVRDTAHPSYALSVLGMPGFTAYHGLLNIGQPRPGETVVVAAASGAV
GAVVGQIARIRGARVIGVAGGAEKRRYVTEQLGFDACLDRRDPHLAQQLAEACPDGIDVYFENVGGAVLDAVLPLLREGA
RVPVCGGIAHYNDEAPPPGPDRLPMLMALVLRKRLRLQGFIILDHYADGYAPFLRDMSAWVAEGKVKLREDVVVGLENAP
AALMGLLEGKNFGKVVVRVAD

Sequences:

>Translated_341_residues
MSSPSVNRRIVLAARPRGAPTAQDFRLEQVPVTAPADGQVLLRTVYLSLDPYMRGRMSEGPSYVPPLALGETMGGGTVSR
VVASRHPGFREGELVLGATGWQDYALSDGEGLMPVRDTAHPSYALSVLGMPGFTAYHGLLNIGQPRPGETVVVAAASGAV
GAVVGQIARIRGARVIGVAGGAEKRRYVTEQLGFDACLDRRDPHLAQQLAEACPDGIDVYFENVGGAVLDAVLPLLREGA
RVPVCGGIAHYNDEAPPPGPDRLPMLMALVLRKRLRLQGFIILDHYADGYAPFLRDMSAWVAEGKVKLREDVVVGLENAP
AALMGLLEGKNFGKVVVRVAD
>Mature_340_residues
SSPSVNRRIVLAARPRGAPTAQDFRLEQVPVTAPADGQVLLRTVYLSLDPYMRGRMSEGPSYVPPLALGETMGGGTVSRV
VASRHPGFREGELVLGATGWQDYALSDGEGLMPVRDTAHPSYALSVLGMPGFTAYHGLLNIGQPRPGETVVVAAASGAVG
AVVGQIARIRGARVIGVAGGAEKRRYVTEQLGFDACLDRRDPHLAQQLAEACPDGIDVYFENVGGAVLDAVLPLLREGAR
VPVCGGIAHYNDEAPPPGPDRLPMLMALVLRKRLRLQGFIILDHYADGYAPFLRDMSAWVAEGKVKLREDVVVGLENAPA
ALMGLLEGKNFGKVVVRVAD

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=346, Percent_Identity=38.150289017341, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI226246680, Length=346, Percent_Identity=38.150289017341, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI22748929, Length=346, Percent_Identity=38.150289017341, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI226059159, Length=340, Percent_Identity=37.6470588235294, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI226059133, Length=340, Percent_Identity=37.6470588235294, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI226056130, Length=302, Percent_Identity=37.4172185430464, Blast_Score=194, Evalue=7e-50,
Organism=Homo sapiens, GI28557745, Length=325, Percent_Identity=28.9230769230769, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI194239674, Length=238, Percent_Identity=28.9915966386555, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI13236495, Length=238, Percent_Identity=28.9915966386555, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI226510941, Length=335, Percent_Identity=62.6865671641791, Blast_Score=429, Evalue=1e-121,
Organism=Caenorhabditis elegans, GI133901712, Length=360, Percent_Identity=32.7777777777778, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI133901710, Length=360, Percent_Identity=32.7777777777778, Blast_Score=186, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6323504, Length=328, Percent_Identity=30.4878048780488, Blast_Score=138, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36276; Mature: 36145

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPSVNRRIVLAARPRGAPTAQDFRLEQVPVTAPADGQVLLRTVYLSLDPYMRGRMSEG
CCCCCCCCEEEEEECCCCCCCHHHCEEEECCCCCCCCCCEEEEEEHHHCCHHHHCCCCCC
PSYVPPLALGETMGGGTVSRVVASRHPGFREGELVLGATGWQDYALSDGEGLMPVRDTAH
CCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCC
PSYALSVLGMPGFTAYHGLLNIGQPRPGETVVVAAASGAVGAVVGQIARIRGARVIGVAG
CCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECC
GAEKRRYVTEQLGFDACLDRRDPHLAQQLAEACPDGIDVYFENVGGAVLDAVLPLLREGA
CCHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHCCHHHHHHHHHHHHCCC
RVPVCGGIAHYNDEAPPPGPDRLPMLMALVLRKRLRLQGFIILDHYADGYAPFLRDMSAW
CCCEECCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHH
VAEGKVKLREDVVVGLENAPAALMGLLEGKNFGKVVVRVAD
HHCCCEEEECEEEEECCCCCHHHHHHHCCCCCCEEEEEEEC
>Mature Secondary Structure 
SSPSVNRRIVLAARPRGAPTAQDFRLEQVPVTAPADGQVLLRTVYLSLDPYMRGRMSEG
CCCCCCCEEEEEECCCCCCCHHHCEEEECCCCCCCCCCEEEEEEHHHCCHHHHCCCCCC
PSYVPPLALGETMGGGTVSRVVASRHPGFREGELVLGATGWQDYALSDGEGLMPVRDTAH
CCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCC
PSYALSVLGMPGFTAYHGLLNIGQPRPGETVVVAAASGAVGAVVGQIARIRGARVIGVAG
CCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECC
GAEKRRYVTEQLGFDACLDRRDPHLAQQLAEACPDGIDVYFENVGGAVLDAVLPLLREGA
CCHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHCCHHHHHHHHHHHHCCC
RVPVCGGIAHYNDEAPPPGPDRLPMLMALVLRKRLRLQGFIILDHYADGYAPFLRDMSAW
CCCEECCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHH
VAEGKVKLREDVVVGLENAPAALMGLLEGKNFGKVVVRVAD
HHCCCEEEECEEEEECCCCCHHHHHHHCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]