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The map label for this gene is yfkH [H]

Identifier: 220918325

GI number: 220918325

Start: 3586869

End: 3587885

Strand: Reverse

Name: yfkH [H]

Synonym: A2cp1_3229

Alternate gene names: 220918325

Gene position: 3587885-3586869 (Counterclockwise)

Preceding gene: 220918326

Following gene: 220918324

Centisome position: 71.34

GC content: 72.47

Gene sequence:

>1017_bases
ATGCGGCTGCCCGGCGACGGCATGAGCTGGAGGGAGTTCGGCAAGGGGCTCTACCACGAGCTCGACCACGACAACGTCAC
CGACCTGGCCGCCACGGTCACCTACTACGGCGTGCTGGCGCTGTTCCCGTTCCTGCTGTTCCTGGTGGCGCTCGCGAGCG
TGGTCATCACGCCGGCCCAGGCGCAGCAGCTGGTGCACCAGCTCGCGCAGGTCGCGCCGGGCGAGGTGACGAAGATCGTG
GGCGACCGCATCCAGCAGCTGGGCGCCCAGCAGAACGTGACGCTGCTCGGCTTCGGCGCGCTGGGCGCGCTCTGGGCTGC
GTCGGGCGCCACGCTCGCGCTCATGCGGTCCCTGAACACCGCGTACGACGTGGGCGAGTCGCGGCCGTTCTGGAAGGTCC
GGGCCATCGCCCTGCTCATGACGGTGGTGGCCGGGGTGCTCGCGCTGGTGGGCGCGCTGGCGGCGGTCGCGACCGAGCCG
CTGGCGAACGCGATCGGCGGGCGCGCCGGCGCGGCCATCCTGTGGCTGCGGCTCCCGGTCGCGGCGCTGGTGATGATGTT
CCTGTGGGCGCTGCTCTACTACGTGCTGCCCGACGTGGAGCAGCGCTTCAAGTTCATCACCCCCGGCTCGGTGTTCGGGG
TCGTGCTCTGGGTGCTGGCGTCGTGGGGGTTCGGCAAGTACGTCGCGAACTTCGGCCACTACGACAAGACCTACGGCTCC
ATCGCCGGCGTCATCGTGCTGCTCTTCTGGATGTGGCTCTCCGCCCTGGTCCTGCTGGTGGGGGCGGAGATCAACGCGCT
CATCGAGCACCGCTCGCCGGAGGGCAAGCGCGAGGGGGCGAAGTCCATGCAGGACACGGGGATGGGGCCGGTGGCGCGGG
CGTCCGCGCCGGACGAGCCGGCCCGGGCAGCCCCGGCGCCCCTGCGTGCGCCGCCTCGCCGCCGGCGGATCGGGGGCCTC
ACCGCGCTCGTCGCCGGCCTCGCCGCCGGGATCCTGATCGGCCGCAGGGAGGCGTGA

Upstream 100 bases:

>100_bases
CGCCGGCGCCGCGCGCGCCCGCTCCCTCGGCCGGTGGGCGCGGGTCCGGCCCGCGCCGCCTCCACCCGCGTGACCATCTT
CAGCGGCACGGGGGATCGGC

Downstream 100 bases:

>100_bases
CCGCAGGCCACGCCCGCCCGGCGCCCCCCGGGCGCCAGGAACCGGGCTAGAATCCCGCCCCCCGCGCCCTCCGGCCCGGG
CCCCACGCCATGGAACCGAC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRLPGDGMSWREFGKGLYHELDHDNVTDLAATVTYYGVLALFPFLLFLVALASVVITPAQAQQLVHQLAQVAPGEVTKIV
GDRIQQLGAQQNVTLLGFGALGALWAASGATLALMRSLNTAYDVGESRPFWKVRAIALLMTVVAGVLALVGALAAVATEP
LANAIGGRAGAAILWLRLPVAALVMMFLWALLYYVLPDVEQRFKFITPGSVFGVVLWVLASWGFGKYVANFGHYDKTYGS
IAGVIVLLFWMWLSALVLLVGAEINALIEHRSPEGKREGAKSMQDTGMGPVARASAPDEPARAAPAPLRAPPRRRRIGGL
TALVAGLAAGILIGRREA

Sequences:

>Translated_338_residues
MRLPGDGMSWREFGKGLYHELDHDNVTDLAATVTYYGVLALFPFLLFLVALASVVITPAQAQQLVHQLAQVAPGEVTKIV
GDRIQQLGAQQNVTLLGFGALGALWAASGATLALMRSLNTAYDVGESRPFWKVRAIALLMTVVAGVLALVGALAAVATEP
LANAIGGRAGAAILWLRLPVAALVMMFLWALLYYVLPDVEQRFKFITPGSVFGVVLWVLASWGFGKYVANFGHYDKTYGS
IAGVIVLLFWMWLSALVLLVGAEINALIEHRSPEGKREGAKSMQDTGMGPVARASAPDEPARAAPAPLRAPPRRRRIGGL
TALVAGLAAGILIGRREA
>Mature_338_residues
MRLPGDGMSWREFGKGLYHELDHDNVTDLAATVTYYGVLALFPFLLFLVALASVVITPAQAQQLVHQLAQVAPGEVTKIV
GDRIQQLGAQQNVTLLGFGALGALWAASGATLALMRSLNTAYDVGESRPFWKVRAIALLMTVVAGVLALVGALAAVATEP
LANAIGGRAGAAILWLRLPVAALVMMFLWALLYYVLPDVEQRFKFITPGSVFGVVLWVLASWGFGKYVANFGHYDKTYGS
IAGVIVLLFWMWLSALVLLVGAEINALIEHRSPEGKREGAKSMQDTGMGPVARASAPDEPARAAPAPLRAPPRRRRIGGL
TALVAGLAAGILIGRREA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790319, Length=275, Percent_Identity=25.4545454545455, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 36049; Mature: 36049

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPGDGMSWREFGKGLYHELDHDNVTDLAATVTYYGVLALFPFLLFLVALASVVITPAQ
CCCCCCCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
AQQLVHQLAQVAPGEVTKIVGDRIQQLGAQQNVTLLGFGALGALWAASGATLALMRSLNT
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHH
AYDVGESRPFWKVRAIALLMTVVAGVLALVGALAAVATEPLANAIGGRAGAAILWLRLPV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AALVMMFLWALLYYVLPDVEQRFKFITPGSVFGVVLWVLASWGFGKYVANFGHYDKTYGS
HHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
IAGVIVLLFWMWLSALVLLVGAEINALIEHRSPEGKREGAKSMQDTGMGPVARASAPDEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
ARAAPAPLRAPPRRRRIGGLTALVAGLAAGILIGRREA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLPGDGMSWREFGKGLYHELDHDNVTDLAATVTYYGVLALFPFLLFLVALASVVITPAQ
CCCCCCCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
AQQLVHQLAQVAPGEVTKIVGDRIQQLGAQQNVTLLGFGALGALWAASGATLALMRSLNT
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHHH
AYDVGESRPFWKVRAIALLMTVVAGVLALVGALAAVATEPLANAIGGRAGAAILWLRLPV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AALVMMFLWALLYYVLPDVEQRFKFITPGSVFGVVLWVLASWGFGKYVANFGHYDKTYGS
HHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
IAGVIVLLFWMWLSALVLLVGAEINALIEHRSPEGKREGAKSMQDTGMGPVARASAPDEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
ARAAPAPLRAPPRRRRIGGLTALVAGLAAGILIGRREA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]