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The map label for this gene is sdhB [H]

Identifier: 220918222

GI number: 220918222

Start: 3450669

End: 3451478

Strand: Reverse

Name: sdhB [H]

Synonym: A2cp1_3125

Alternate gene names: 220918222

Gene position: 3451478-3450669 (Counterclockwise)

Preceding gene: 220918223

Following gene: 220918221

Centisome position: 68.63

GC content: 69.01

Gene sequence:

>810_bases
ATGAGCGCGCACGCTTCCGAGCACGGGACGATGAACCTGAAGCTCATCGTCTGGCGGCAGGCCGGTCCCAACGAGCCTGG
ACGCTTCGAGACCTACGACGCGAAGGGCATCACGCCGCATCACTCCTTCCTGGAGATGCTGGACGTGGTGAACGAGGACC
TGATCAAGCAGGGCAAGGACCCGATCGTCTTCGACCACGACTGCCGCGAGGGCATCTGCGGCGCCTGCTCGGCCGTGGTC
AACGGCGTCCCGCACGGCGGCTACAAGCGCACCACGCTCTGCCAGCTGCACATGCGGAAGTTCAAGGACGGCGACGCGAT
CTACCTCGAGCCGTGGCGCGCCCGCGCGTTCCCCATCATCAAGGACCTGATGGTGGACCGCGGCGCCCTCGACCGCCTCA
TCCAGGCGGCCGGCTGGACGTCGGCCCACACCGGCGGCGTCCCCGACGGCAACTCGACGCCCATCCCGAAGCGCGCCGCC
GACTACGCCATGGACGCGGCCGAGTGCATCGGCTGCGGCGCCTGCGTGGCGGCCTGCCCGAACGGCGCGGCGATGCTGTT
CGCCGGCGCCAAGGTGTCCCAGCTCGCCGAGCTGCCGCAGGGCCAGGTGGAGGCGCCGGAGCGCGTCGCCGCCATGATCC
AGGCGATGGCCGACAACGGGTTCGGCAACTGCTCGAACCACTACGAGTGCGAGGCCGCCTGCCCGAAGGGCATCGACGTG
AAGTTCATCGCCCGCCTGAACCGCGAGTTCCGCAAGGCGCTGGTGATGGACAAGGTCGGCGCGCTGAAGAAGTCCGAGAA
GGCGGAGTAG

Upstream 100 bases:

>100_bases
CGGCCGCCTGGGAGTTCAAGGGAATCGGCAAGGAGCCGGAGCTCCACAAGGAGCCGCTCAAGTTCGAGAACGTCCACCTC
GCGGTGAGGAGCTACAAGTA

Downstream 100 bases:

>100_bases
CCGACGCGGACCGCATGACGGCATGAGGCGGGGCAGGGGCGCGCGCGTCCCTGCCCCGCTGCGTTTCTGGCGCACGGAGG
GCGAATGAGCCTCGACCCCG

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSAHASEHGTMNLKLIVWRQAGPNEPGRFETYDAKGITPHHSFLEMLDVVNEDLIKQGKDPIVFDHDCREGICGACSAVV
NGVPHGGYKRTTLCQLHMRKFKDGDAIYLEPWRARAFPIIKDLMVDRGALDRLIQAAGWTSAHTGGVPDGNSTPIPKRAA
DYAMDAAECIGCGACVAACPNGAAMLFAGAKVSQLAELPQGQVEAPERVAAMIQAMADNGFGNCSNHYECEAACPKGIDV
KFIARLNREFRKALVMDKVGALKKSEKAE

Sequences:

>Translated_269_residues
MSAHASEHGTMNLKLIVWRQAGPNEPGRFETYDAKGITPHHSFLEMLDVVNEDLIKQGKDPIVFDHDCREGICGACSAVV
NGVPHGGYKRTTLCQLHMRKFKDGDAIYLEPWRARAFPIIKDLMVDRGALDRLIQAAGWTSAHTGGVPDGNSTPIPKRAA
DYAMDAAECIGCGACVAACPNGAAMLFAGAKVSQLAELPQGQVEAPERVAAMIQAMADNGFGNCSNHYECEAACPKGIDV
KFIARLNREFRKALVMDKVGALKKSEKAE
>Mature_268_residues
SAHASEHGTMNLKLIVWRQAGPNEPGRFETYDAKGITPHHSFLEMLDVVNEDLIKQGKDPIVFDHDCREGICGACSAVVN
GVPHGGYKRTTLCQLHMRKFKDGDAIYLEPWRARAFPIIKDLMVDRGALDRLIQAAGWTSAHTGGVPDGNSTPIPKRAAD
YAMDAAECIGCGACVAACPNGAAMLFAGAKVSQLAELPQGQVEAPERVAAMIQAMADNGFGNCSNHYECEAACPKGIDVK
FIARLNREFRKALVMDKVGALKKSEKAE

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=212, Percent_Identity=27.8301886792453, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 29055; Mature: 28923

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00197 2FE2S_FER_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHASEHGTMNLKLIVWRQAGPNEPGRFETYDAKGITPHHSFLEMLDVVNEDLIKQGKD
CCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PIVFDHDCREGICGACSAVVNGVPHGGYKRTTLCQLHMRKFKDGDAIYLEPWRARAFPII
CEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHH
KDLMVDRGALDRLIQAAGWTSAHTGGVPDGNSTPIPKRAADYAMDAAECIGCGACVAACP
HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
NGAAMLFAGAKVSQLAELPQGQVEAPERVAAMIQAMADNGFGNCSNHYECEAACPKGIDV
CCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCH
KFIARLNREFRKALVMDKVGALKKSEKAE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SAHASEHGTMNLKLIVWRQAGPNEPGRFETYDAKGITPHHSFLEMLDVVNEDLIKQGKD
CCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PIVFDHDCREGICGACSAVVNGVPHGGYKRTTLCQLHMRKFKDGDAIYLEPWRARAFPII
CEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHH
KDLMVDRGALDRLIQAAGWTSAHTGGVPDGNSTPIPKRAADYAMDAAECIGCGACVAACP
HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
NGAAMLFAGAKVSQLAELPQGQVEAPERVAAMIQAMADNGFGNCSNHYECEAACPKGIDV
CCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCH
KFIARLNREFRKALVMDKVGALKKSEKAE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]