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The map label for this gene is yebA [H]

Identifier: 220917705

GI number: 220917705

Start: 2883538

End: 2884254

Strand: Direct

Name: yebA [H]

Synonym: A2cp1_2606

Alternate gene names: 220917705

Gene position: 2883538-2884254 (Clockwise)

Preceding gene: 220917704

Following gene: 220917706

Centisome position: 57.33

GC content: 80.2

Gene sequence:

>717_bases
GTGATCGCGCCCGCCGCCGCGCCCGCCGCGGATCCGCGGCTGCGGGAGGCCGCGCAGGCGCTCGAGGCCATGCTGCTCCG
CGAGATCGTGAAGACGAGCGGCGCGTTCCGCGGCGGCGAGGGCGCCGGCGCCGGGGTCCGCGCCGACCTGTTCGCCGACG
CGCTCTCCGACGCGGTGGCGCGCTCGGGCGGCATCGGGCTCGCCGGCGAGATCACCCGATCGCTCGGAGGCGCCGGAGAT
CCCGCGCCGGCCCCGCCGGCCGGCCCGTCCCTGCCGCGGGGCGTCGCGCCCGGCGCGCTCGCGGCGCCGCTGCTGGGCCG
GCTCACCAGCGCGTTCGGCCCGCGCGCCGATCCGCTCACCGGCGCCGCCACCCGCCACGACGGCGTGGACGTCGCCGCGC
CGGAGGGCACGCCGGTGCGCGCCCCCGCGGCCGGGGTGGTCGTCCGCGCCGGACCGCGCGGCGGCTACGGCAACGCGGTG
GAGGTGGACCACGGCGGCGGCCTGCTGACGCTGTACGGGCACGCCGCCGAGGTGCGCGTCCGCCCGGGCCAGGTGGTGGC
CGCGGGGGACGAGCTGGCGCTGGTGGGGAGCACCGGCCGCTCCACCGGGCCGCACCTCCACTTCGAGGTCCGGATGAGGG
GCCGGGCGATCGATCCGGCGCGAGCCCTCAAGATCTACGCACAGCGTGCCGATGAGCGCGGCAGGAGCGGACCGTGA

Upstream 100 bases:

>100_bases
GCGCGCTCGACCTGCTCGGCGCGAGCCCCCGCGACCTCGTGGCCGTGCTGGAGGCGATCCGCGCCGCGGGCGCGCTCGAC
GCCGAGCTCGAGGTGCTCGA

Downstream 100 bases:

>100_bases
GCAGGAGGTCTCCATGAAGATCAACGATGCCGCAGAGATCCGTCGCGTCCAGGCGGGACGTACCGCGGGGTCGCCGCGCA
CCCGGGAGGCGGGTGCGCCG

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MIAPAAAPAADPRLREAAQALEAMLLREIVKTSGAFRGGEGAGAGVRADLFADALSDAVARSGGIGLAGEITRSLGGAGD
PAPAPPAGPSLPRGVAPGALAAPLLGRLTSAFGPRADPLTGAATRHDGVDVAAPEGTPVRAPAAGVVVRAGPRGGYGNAV
EVDHGGGLLTLYGHAAEVRVRPGQVVAAGDELALVGSTGRSTGPHLHFEVRMRGRAIDPARALKIYAQRADERGRSGP

Sequences:

>Translated_238_residues
MIAPAAAPAADPRLREAAQALEAMLLREIVKTSGAFRGGEGAGAGVRADLFADALSDAVARSGGIGLAGEITRSLGGAGD
PAPAPPAGPSLPRGVAPGALAAPLLGRLTSAFGPRADPLTGAATRHDGVDVAAPEGTPVRAPAAGVVVRAGPRGGYGNAV
EVDHGGGLLTLYGHAAEVRVRPGQVVAAGDELALVGSTGRSTGPHLHFEVRMRGRAIDPARALKIYAQRADERGRSGP
>Mature_238_residues
MIAPAAAPAADPRLREAAQALEAMLLREIVKTSGAFRGGEGAGAGVRADLFADALSDAVARSGGIGLAGEITRSLGGAGD
PAPAPPAGPSLPRGVAPGALAAPLLGRLTSAFGPRADPLTGAATRHDGVDVAAPEGTPVRAPAAGVVVRAGPRGGYGNAV
EVDHGGGLLTLYGHAAEVRVRPGQVVAAGDELALVGSTGRSTGPHLHFEVRMRGRAIDPARALKIYAQRADERGRSGP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=132, Percent_Identity=45.4545454545455, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=42.4242424242424, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082297, Length=128, Percent_Identity=40.625, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=40.4040404040404, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 23633; Mature: 23633

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPAAAPAADPRLREAAQALEAMLLREIVKTSGAFRGGEGAGAGVRADLFADALSDAVA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RSGGIGLAGEITRSLGGAGDPAPAPPAGPSLPRGVAPGALAAPLLGRLTSAFGPRADPLT
HCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GAATRHDGVDVAAPEGTPVRAPAAGVVVRAGPRGGYGNAVEVDHGGGLLTLYGHAAEVRV
CCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEECCEEEEEE
RPGQVVAAGDELALVGSTGRSTGPHLHFEVRMRGRAIDPARALKIYAQRADERGRSGP
CCCCEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIAPAAAPAADPRLREAAQALEAMLLREIVKTSGAFRGGEGAGAGVRADLFADALSDAVA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RSGGIGLAGEITRSLGGAGDPAPAPPAGPSLPRGVAPGALAAPLLGRLTSAFGPRADPLT
HCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GAATRHDGVDVAAPEGTPVRAPAAGVVVRAGPRGGYGNAVEVDHGGGLLTLYGHAAEVRV
CCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEECCEEEEEE
RPGQVVAAGDELALVGSTGRSTGPHLHFEVRMRGRAIDPARALKIYAQRADERGRSGP
CCCCEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]