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The map label for this gene is fliR [H]

Identifier: 220917692

GI number: 220917692

Start: 2871404

End: 2872156

Strand: Direct

Name: fliR [H]

Synonym: A2cp1_2593

Alternate gene names: 220917692

Gene position: 2871404-2872156 (Clockwise)

Preceding gene: 220917691

Following gene: 220917693

Centisome position: 57.09

GC content: 80.88

Gene sequence:

>753_bases
GTGGACCTGCCGCTCGCCGCCGCCTGGGGCTTCGGCCTGCTGCTGCTCCGCACGGCCGGGCTGTGCGCGGTCGCGCCGGT
GCTGGGCGCGCGGGTGGTGCCGGCCCGCGTCCGGCTCGGGCTGGCCCTCGCGCTCACCTGGGCGGTGCACGCAGGCGCCG
GCTCCCCCGCGGTGCCGCCGCCTCCCGGCCTGGCCGCCCTGGCCGGCGCCGCGCTCGCGGAGACCGCCACCGGCCTCCTG
GCCGGCCTCGCGGCGCGCTGGACGCTCGACGCCGCGCTCGCCGCCGGCCACCTCGTCGGCCTCTCCGCGGGCCTGGGCTA
CTCCGCGCTCGTCGATCCCATCACCGGCGCCGAGTCGAGCGCGGTGTCGCAGACCGTGTTCGTGGTGGCGCAGGCGGTGG
CGGTGGCGCTCGGGGTGCACCGCGAGGCGGTGGCGTGGCTCGTCCGCGCGGCCCTGGTGTGGCCTCCGGGCGCGGCGCCG
GACCTGGCGGAGCTCGCCTCGCGCGCGGTCGGGCAGGCGGCCCTGTCGGTGGCGCTGGCGGTCCGGCTCGCGTTCCCGGT
CATGGCGGCGGCGCTGCTCGGCCACCTCCTGCTGGCGGCGATGGGCCGGATGGCCCCGCAGCTCTCGCTCTCGAACGTGG
GGTTCTCGGCCTCCACGCTCGCCGCCGGCCTGGCGCTGTACCTGACCGCGCCCGCCGCCGCCGAGCTGGCGGCGCGCGCC
GCGGTGGCGGCGCTGGCCGGGCCGGGAGGGTGA

Upstream 100 bases:

>100_bases
GGCCGCCGCGGGCGTGGTGATCTGGCTGCTGGGCGGCTGGATGATGGACCGGCTCTCCGGGTTCCTGGCGCAGTGCATCG
TCAGGATGGCGGGACGCTGA

Downstream 100 bases:

>100_bases
CGCGGTGGCCGACGCCGAGGACCAGGAGAACCGCACCGAGCCGGCCAGCGCGCAGCGCCTGGCCCGCGCCCGCGACGAGG
GCCAGGTGCCGCTCGGCCAC

Product: type III secretion system inner membrane R protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDLPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGSPAVPPPPGLAALAGAALAETATGLL
AGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESSAVSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAP
DLAELASRAVGQAALSVALAVRLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALYLTAPAAAELAARA
AVAALAGPGG

Sequences:

>Translated_250_residues
MDLPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGSPAVPPPPGLAALAGAALAETATGLL
AGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESSAVSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAP
DLAELASRAVGQAALSVALAVRLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALYLTAPAAAELAARA
AVAALAGPGG
>Mature_250_residues
MDLPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGSPAVPPPPGLAALAGAALAETATGLL
AGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESSAVSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAP
DLAELASRAVGQAALSVALAVRLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALYLTAPAAAELAARA
AVAALAGPGG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=235, Percent_Identity=30.6382978723404, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 24214; Mature: 24214

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGSPAVPP
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PPGLAALAGAALAETATGLLAGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
AVSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAPDLAELASRAVGQAALSVALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
VRLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALYLTAPAAAELAARA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
AVAALAGPGG
HHHHHCCCCC
>Mature Secondary Structure
MDLPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGSPAVPP
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PPGLAALAGAALAETATGLLAGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
AVSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAPDLAELASRAVGQAALSVALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
VRLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALYLTAPAAAELAARA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
AVAALAGPGG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]