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The map label for this gene is rpoB

Identifier: 220917459

GI number: 220917459

Start: 2615824

End: 2620092

Strand: Reverse

Name: rpoB

Synonym: A2cp1_2359

Alternate gene names: 220917459

Gene position: 2620092-2615824 (Counterclockwise)

Preceding gene: 220917460

Following gene: 220917458

Centisome position: 52.1

GC content: 66.46

Gene sequence:

>4269_bases
ATGGCGACGACGATTCAGAACAACTTCCGGATCCGGCGGAACTTCGGGAAGATCAACAAGATCGCCGAGATCCCCAACCT
CATCGCCATCCAGAAATTCTCCTACGACAAGTTCTTGCAGGCCGACGTCCCGCCGGAGAAGCGGGACGACACCGGCCTTC
AGGGTGTCTTCAAGTCGGTCTTCCCCATCAAGGACTTCAACGAGACCAGCTCGCTCGAGTTCGTGAGCTACCACCTCGAG
AAGCCCAAGTACGACGTGGACGAGTGCCACCAGCGCGGGATGACCTACTCCGCGCCGATCAAGGTGGTCGTCCGCCTGGT
CGTCTGGGACAAGGACGAGGAGACCGGCGCCCAGTCGATCCGCGACGTCAAGGAGCAGGAGGTCTACTTCGGCGAGATCC
CGCTCATGACGGAGAACGGGACCTTCATCATCAACGGGACCGAGCGCGTCGTCGTCAGCCAGCTCCACCGCTCCCCGGGC
GCGTTCTTCGACCACGACAAGGGCAAGAGCCACTCGTCCGGCAAGCTGCTCTACAACGCCCGGATCATCCCGTACCGCGG
CTCGTGGATCGACTTCGAGTTCGATCACAAGGACATCCTCTACGTCCGCATCGACCGGCGCCGCAAGCTGCCGGCCACGG
TGCTGCTGCGCGCGCTCGGCGCGACGCCGGACACGGCCAAGAAGGACCCGGTGGAGTTCCACGGGTCGGCCGAGGAGATC
CTCAAGTACTACTACGACACCGAGACGATCCGGATCGAGGGGAAGGGCAAGTACGAGAAGGACCTCGTGCCCGACCTGCT
CAAGGGCCAGCGCGCCACGCGCGACATCCGCGATCCCAAGTCGAACGAGGTGATCGTCAAGAAGAACCGCAAGTACACCG
AGAGCGCGATCAAGAAGCTGGTCGCCGCGAAGATGAAGTCGCTCCCGGTGGAGCCGGAGGAGGTCTACACGAAGATCTCC
GCCGAGGACGTGGTCGACGAGACCACCGGCGAGGTGCTCCTCGAGGTGAACGAGGAGGTCACCGAGGCCAAGGTCGAGGA
GCTGCGCAAGCGCAACATCAACGAGTTCAAGGTTCTCTTCATCGACAACCTGAACATCCTGCCCGCGCTCCGCGACACGC
TCATGCAGGACAAGATCTCCACGCCCGAGGAGGCGATCATGGAGATCTACCGCCGCCTCCGCCCCGGCGATCCGCCGACG
CCGGAGACCGCGACGAACCTCTTCGTGAACCTGTTCTTCAACGCCGAGCGCTACGACCTGTCGAAGGTCGGCCGCCTCAA
GCTGAACTACAAGTTCGGCATCGAGGAGCCGCTCGAGAACACGGTCCTCACCAAGCGCGACATCCTCGAGGTCGTCCGCT
TCCTCATCGACCTCAAGAACGGCAAGCCGAACAAGGACGTCGACGACATCGACCACCTCGGCAACCGCCGCGTCCGCGCG
GTGGGCGAGCTGCTCGAGAACCAGTACCGCATCGGCCTGGTGCGCATGGAGCGGGCGATCAAGGAGCGCATGAGCCTCCA
GGAGATCGAGACGCTCATGCCCCACGACCTGATCAACGCGAAGCCGGTGACCGCGGTGATCAAGGAGTTCTTCGGGTCGA
GCCAGCTCTCGCAGTTCATGGACCAGACGAACCCGCTCTCCGAGGTCACGCACAAGCGGCGCCTCTCGGCCCTCGGGCCT
GGCGGCCTGACCCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTCCACTCCACGCACTACGGCCGCATCTGCCCCATCGA
GACGCCGGAAGGCCCGAACATCGGCCTGATCGCGTCGCTGTCCACCTACGCCCGCGTCAACGAGTACGGCTTCGTCGAGA
CGCCGTACCGCAAGGTGGAGAAGGGCCGGGTGACCGACGAGGTGACCTTCTACTCCGCGCTCGAGGAGGAGAAGCACATC
ATCGCCCAGGCGAACGCGCCGGTGGACAAGAAGGGCAACTTCACCGAGGCGAAGGTCTGGTGCCGCAAGGAGGGCGAGTA
CATCTACGTCCGCCCGGACGAGGTGGACCTGATGGACGTGAGCCCGAACCAGCTCGTGTCCGTGGCCGCCTCCCTGGTGC
CGTTCCTCGAGAACGACGACGCGAACCGCGCGCTGATGGGCTCCAACATGCAGCGCCAGGCCGTGCCGCTGCTCCGCACG
CAGGCGCCGCTGGTGGGCACCGGGATCGAGGCCATCGTGGCCCGCGACTCCGGCGTGACCACCGTCGCGAAGCGCGACGG
CGTGGTCCAGTCGGTGGACGCCTCGCGCATCGTGGTGAAGGCCGACGTGCCGACCTCGGCGACCGACGTCGCGAACGAGG
TCGACATCTACAACCTCATCAAGTACCAGCGCTCCAACCAGAACACCTGCATCAACCAGAAGCCCATCGTGAAGCCGGGC
GAGCGGGTGAAGAAGGGCGACGTCATCGCCGATGGCCCGGCCACCGAGATGGGCGAGCTCGCGCTCGGCCAGAACGTGGT
GGTCGCGTTCATGCCGTGGCAGGGCTACAACTTCGAGGACTCCATCCTCCTCTCCGAGCGCCTCATCAAGGAGGACGTGT
TCACGTCGGTGCACATCGAGGAGTTCGAGTGCGTCGCGCGCGACACCAAGCTCGGCAAGGAGGAGATCACCCGGGACATC
CCGAACGTCGGCGAGGAGGCCCTCAAGGACCTCGACGAGTCCGGCATCATCCGCATCGGCGCCGAGGTGAAGCCCGGTGA
CATCCTGGTCGGCAAGATCACGCCGAAGGGCGAGACCCAGCTCTCGCCGGAGGAGAAGCTCCTCCGCGCCATCTTCGGCG
AGAAGGCCGGCGACGTCCGCGACAGCTCGCTGCGCGTGCCGCCGGGCGTCTCGGGCACGGTGATCAACGCCAAGGTCTTC
AGCCGCAAGGGCGTCGAGAAGGACGAGCGCGCCAAGGCCATCGAGGAGATGGAGGAGGCGAAGCTCCTCAAGGACCAGAA
CGACGAGATCAAGATCATCCAGGACTCGGCGTTCCAGAAGATCCGCCGCCTGCTCCTCGGCAAGGAGGTCACGGCCCGCC
TGGTCGACGACAAGGGCGAGCAGCTCCTGAAGAAGGGCGACGTCCTCGACGACGCGCTGCTCGACACCGTCCCGCAGCGC
TACTGGGGCGAGATCGCCGTCGCCGGCGACGTGCAGGACCTGGCGCGGAAGATCATCGAGAACTTCGAGGAGCAGAAGGA
GCTCGTGAAGCTGCTCTTCGGCGAGAAGATCGGCCGCCTGAAGAAGGGCGACGAGCTGCCGCCGGGCGTGATCAAGATGG
TGAAGGTGTACGTCGCCATCAAGCGCAAGCTGGCCGTCGGCGACAAGATGGCCGGCCGCCACGGCAACAAGGGCGTGGTC
TCGCGCGTGCTGCCCGAGGAGGACCTGCCGTACCTCGAGGACGGCACCCCGGTCGACATCGTGCTCAACCCGCTCGGCGT
GCCGTCGCGCATGAACGTCGGGCAGATCCTCGAGACGCACCTGGGCTGGGCCGCGCGCAACGTCGGCCTCCGGCTGCAGG
AGATGATCGAGAAGGAGTGGGGCGCCGACCCGCTGCGGAAGAAGCTGAAGGCGGCGTTCGCCGGGACCGAGGGCGGCCCC
GTCGGCGAGCGGCTCGCCGCGCTCATCGAGGACGTGCCGGAGAAGGAGCTGCCGAAGCTCGTGCAGAAGCTCCGCCGCGG
CATGCACGTCGCGACGCCGGTGTTCGACGGCGCCCGCGAGGACGAGATGAAGGCCCTCATGGAGGAGGGCTCCGCGACGC
TCCAGTCCATCCTGTTCGACGGCCGCACCGGCGAGCCCTTCGACCAGGACGTGACGGTCGGCGTCATGTACATGCTGAAG
CTCCACCACCTCGTGGACGAGAAGATCCACGCCCGGAGCATCGGGCCGTACTCGCTCGTCACGCAGCAGCCGCTGGGCGG
CAAGGCCCAGTTCGGCGGCCAGCGCCTGGGCGAGATGGAGGTCTGGGCGATGGAGGCCTACGGCGCGGCCTACTCGCTCC
AGGAGTTCCTCACGGTGAAGTCCGACGACGTGGTCGGCCGCACCCGCATGTACGAGGCGATCGTCAAGGGCGAGAACACG
CTCGAGTCCGGGCTGCCCGAGTCGTTCAACGTGCTGATCAAGGAGCTCCAGAGCCTCGCGCTCGACGTGGAGCTGCTCGA
GACGCCGGAGGCGCAGGCGGCGCGCGAGGCCGCCGAGCGCGACCTCGGCGGCGGCCCGCTGGGCGCGCCGCGCGGCGCGG
TCGCGTCGGGAGAGAAGAGCAGCGCGTAG

Upstream 100 bases:

>100_bases
GGATTTCCGGCCGCTCGGCCGGGCGACGCAGGATAGCCGGCCCGGCGGCCGGCTAGACCCTTTTGTGGCGGGTCTCGTTG
GGGAAAGAGGACCGAAATCG

Downstream 100 bases:

>100_bases
CGCGCGCGTCCGGGGCCGCGCCCTCCCTCTCCCCGCCAGGGCGGGGAGGGGGCCGGCGCGAGGGTGCTGATCAGGTTTCC
CAGCTTTCCAGGGAGTCGAC

Product: DNA-directed RNA polymerase subunit beta

Products: NA

Alternate protein names: RNAP subunit beta; RNA polymerase subunit beta; Transcriptase subunit beta

Number of amino acids: Translated: 1422; Mature: 1421

Protein sequence:

>1422_residues
MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSVFPIKDFNETSSLEFVSYHLE
KPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPG
AFFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI
LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKLVAAKMKSLPVEPEEVYTKIS
AEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLFIDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPT
PETATNLFVNLFFNAERYDLSKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA
VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGP
GGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHI
IAQANAPVDKKGNFTEAKVWCRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT
QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLIKYQRSNQNTCINQKPIVKPG
ERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDI
PNVGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF
SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGEQLLKKGDVLDDALLDTVPQR
YWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRLKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVV
SRVLPEEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP
VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEGSATLQSILFDGRTGEPFDQDVTVGVMYMLK
LHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENT
LESGLPESFNVLIKELQSLALDVELLETPEAQAAREAAERDLGGGPLGAPRGAVASGEKSSA

Sequences:

>Translated_1422_residues
MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSVFPIKDFNETSSLEFVSYHLE
KPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPG
AFFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI
LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKLVAAKMKSLPVEPEEVYTKIS
AEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLFIDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPT
PETATNLFVNLFFNAERYDLSKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA
VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGP
GGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHI
IAQANAPVDKKGNFTEAKVWCRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT
QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLIKYQRSNQNTCINQKPIVKPG
ERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDI
PNVGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF
SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGEQLLKKGDVLDDALLDTVPQR
YWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRLKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVV
SRVLPEEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP
VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEGSATLQSILFDGRTGEPFDQDVTVGVMYMLK
LHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENT
LESGLPESFNVLIKELQSLALDVELLETPEAQAAREAAERDLGGGPLGAPRGAVASGEKSSA
>Mature_1421_residues
ATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSVFPIKDFNETSSLEFVSYHLEK
PKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSIRDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGA
FFDHDKGKSHSSGKLLYNARIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEIL
KYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKLVAAKMKSLPVEPEEVYTKISA
EDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLFIDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTP
ETATNLFVNLFFNAERYDLSKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRAV
GELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPG
GLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASLSTYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHII
AQANAPVDKKGNFTEAKVWCRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRTQ
APLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLIKYQRSNQNTCINQKPIVKPGE
RVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFEDSILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIP
NVGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVFS
RKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGEQLLKKGDVLDDALLDTVPQRY
WGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRLKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVS
RVLPEEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGPV
GERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEGSATLQSILFDGRTGEPFDQDVTVGVMYMLKL
HHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTL
ESGLPESFNVLIKELQSLALDVELLETPEAQAAREAAERDLGGGPLGAPRGAVASGEKSSA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0085

COG function: function code K; DNA-directed RNA polymerase, beta subunit/140 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta chain family

Homologues:

Organism=Homo sapiens, GI238908505, Length=300, Percent_Identity=29.6666666666667, Blast_Score=124, Evalue=5e-28,
Organism=Homo sapiens, GI238908503, Length=300, Percent_Identity=29.6666666666667, Blast_Score=124, Evalue=6e-28,
Organism=Homo sapiens, GI4505941, Length=308, Percent_Identity=27.5974025974026, Blast_Score=111, Evalue=4e-24,
Organism=Homo sapiens, GI33469941, Length=82, Percent_Identity=43.9024390243902, Blast_Score=80, Evalue=2e-14,
Organism=Homo sapiens, GI212286172, Length=82, Percent_Identity=43.9024390243902, Blast_Score=80, Evalue=2e-14,
Organism=Escherichia coli, GI1790419, Length=1379, Percent_Identity=57.1428571428571, Blast_Score=1557, Evalue=0.0,
Organism=Caenorhabditis elegans, GI25144348, Length=299, Percent_Identity=29.0969899665552, Blast_Score=117, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17552304, Length=316, Percent_Identity=27.8481012658228, Blast_Score=114, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17506623, Length=70, Percent_Identity=47.1428571428571, Blast_Score=70, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324725, Length=253, Percent_Identity=30.8300395256917, Blast_Score=116, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6325267, Length=252, Percent_Identity=29.3650793650794, Blast_Score=113, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6324781, Length=300, Percent_Identity=26, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136444, Length=315, Percent_Identity=26.6666666666667, Blast_Score=110, Evalue=7e-24,
Organism=Drosophila melanogaster, GI17647877, Length=300, Percent_Identity=26.6666666666667, Blast_Score=90, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17136446, Length=74, Percent_Identity=45.945945945946, Blast_Score=73, Evalue=2e-12,

Paralogues:

None

Copy number: 4233 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): RPOB_ANAD2 (B8JB70)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002492763.1
- GeneID:   7297613
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_2359
- HOGENOM:   HBG285547
- ProtClustDB:   PRK00405
- HAMAP:   MF_01321
- InterPro:   IPR010243
- InterPro:   IPR019462
- InterPro:   IPR015712
- InterPro:   IPR007120
- InterPro:   IPR007121
- InterPro:   IPR007644
- InterPro:   IPR007642
- InterPro:   IPR007645
- InterPro:   IPR007641
- InterPro:   IPR014724
- Gene3D:   G3DSA:2.40.50.150
- PANTHER:   PTHR20856
- TIGRFAMs:   TIGR02013

Pfam domain/function: PF04563 RNA_pol_Rpb2_1; PF04561 RNA_pol_Rpb2_2; PF04565 RNA_pol_Rpb2_3; PF10385 RNA_pol_Rpb2_45; PF00562 RNA_pol_Rpb2_6; PF04560 RNA_pol_Rpb2_7

EC number: =2.7.7.6

Molecular weight: Translated: 159063; Mature: 158932

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01166 RNA_POL_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV
CCCEECCCCEEECCHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHH
FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHEEHEEECCCCHHHHHHH
RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
HHHHHHHEEECCCEEEECCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI
EEEEECCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL
HHHHHCCEEEEEECCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHH
VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF
HHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEE
IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL
EECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCCHHCH
SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA
HHCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHH
VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCHHHHHHH
DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL
HCCCCHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCCCCCCEECCCCCCCCCEEEEECH
STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW
HHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHEE
CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT
EEECCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHC
QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI
CCCCCCCCCEEEEECCCCCEEEHHCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED
HHHCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCHHHHHCCCCEEEEEECCCCCCCCC
SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCCCCEEEEC
AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEEHH
SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE
HCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHCCHHH
QLLKKGDVLDDALLDTVPQRYWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRL
HHHHHCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEEE
VLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP
EECCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEGSATLQSILFD
HHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEME
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCCC
VWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQSLA
EEEEHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
LDVELLETPEAQAAREAAERDLGGGPLGAPRGAVASGEKSSA
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV
CCEECCCCEEECCHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHH
FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHEEHEEECCCCHHHHHHH
RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
HHHHHHHEEECCCEEEECCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI
EEEEECCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL
HHHHHCCEEEEEECCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHH
VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF
HHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEE
IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL
EECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCCHHCH
SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA
HHCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHH
VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCHHHHHHH
DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL
HCCCCHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCCCCCCEECCCCCCCCCEEEEECH
STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW
HHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHEE
CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT
EEECCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHC
QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI
CCCCCCCCCEEEEECCCCCEEEHHCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED
HHHCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCHHHHHCCCCEEEEEECCCCCCCCC
SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHCCCCCCEEEEC
AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEEHH
SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE
HCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHCCHHH
QLLKKGDVLDDALLDTVPQRYWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRL
HHHHHCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEEE
VLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP
EECCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEGSATLQSILFD
HHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEME
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCCC
VWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQSLA
EEEEHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
LDVELLETPEAQAAREAAERDLGGGPLGAPRGAVASGEKSSA
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA