Click here to switch to the map view.

The map label for this gene is 220917228

Identifier: 220917228

GI number: 220917228

Start: 2376040

End: 2377389

Strand: Reverse

Name: 220917228

Synonym: A2cp1_2126

Alternate gene names: NA

Gene position: 2377389-2376040 (Counterclockwise)

Preceding gene: 220917229

Following gene: 220917223

Centisome position: 47.27

GC content: 72.37

Gene sequence:

>1350_bases
ATGAGCGAGATCCGCGGCTACATCCGCCCGCGCGGCCGGAAGCTCGAGGCGGTGCTCGTGCTCGCCGACGGGACGAAGCG
GCCGAAGGCGACCGGGTTCAGCGTCGGCGAGGAGGAGCAGGCGCAGCGGTTCCTCGACGTCCTCCTCGAGGAGCTGCGCG
GGCCGGCCGCCGCGGCGCCGCGGCCGGGCGCGCTGACGTTCCGCGCCTGGGGCGAGGCCTGGATCGCCGAGCGGAAGAAG
CGTGGCGTGATCTCGGTCGCGAACGAGGAGGCGCAGCTCACCTACCACGCCTTCCCGGACCTCGGCGCCATCCCGCTCGC
GGAGCTCACCCGGGCGCGCATGCTGGAGTGGGTCCGCTCCCTCCCCTCCCGCCGCACCGAGAACACCGGCGAGCTGCTGT
CGCCGCGGTACGTCCACCACGTCGCCGGCACGGTGAAGCGGCTCCTGCAGGAGGCGGTGGACGTCGACCACATCCAGGTG
AACCCCTGCACCTGGCGGCCGAAGCGCGACCTCCCGGCGAAGCGCGACAAGAAGGGCGGAAAGCGCAACCAGGGCGGCCT
CGAACCCGGCGAGGTCTGGCAGCTCATCCACGACGAGCGGATCGGCGAGGACCGCCGGGTGATGTACGCGCTCGATCTCC
TCACCGGGATGCGCCCGGGCGAGGTCGCGGCGCGCCGCTGGCGCGACCTCGACACCACCGCCGAGCCGCTCTGGCGGCTG
CACGTCGGGACGGCCATCAACAGCCGGAACAGCACCGAGAAGAGCACGAAGACGGACGTCGAGAAGGTGGTCCCGGTCCA
CCCGCTGCTCCGGGAGCTGCTCCGGAGCTGGTACGCCGAGGGCTGGAGGAGGTTCCAGGGCCGAGACCCCACCCCTGACG
ACCTGGTCGTGCCGCGTGGAGGCGGCGGGGTGCGGACGAACGGCCACAGCAACAAGCGATGGAAGGCAGACACCGAGCGC
CTGGGCCTCCCGCCCGGCCGCAGCCACTACGAGACGCGGGCGACGTTCCGGTCCCTCGCCATCGCCGGCGGCGCGCAGCG
GGCGGACCTGGACCTCATCACGCACCCGTCGCCGCGCGAGGCTAAGGACGTCTACACGCGCCTGGAGAAGGTCTGGCCGG
CGCTGTGCCGGGCGGTGCTCGCGATCGAGCTCGAGGCGCCCTCGCCGGCGACGCCGGGGGTCACGCGAAACGATACCGAT
GGGGAGGTCGCAGGGGGGATCGCAGTCGCACCTGCAGCCGCGGACCCGGAAATGGAAAAGGCCCGACGCCTTGCGGGCTT
GGGCCTGTTCACAACCTCGGTGCTGAATGTGGGCGCTGCAGGGTTCGAACCTGCGACCCCTGCCGTGTGA

Upstream 100 bases:

>100_bases
TCGACCTCATCCGCATCGCGCGGAGCCGCGGGTGGTACCGCGCCCGCCCCGGCGAGGAGCCGTCCAACGCGCAGCTGGGC
CTCGCCAGGCGGAGGGCGGC

Downstream 100 bases:

>100_bases
AGGCAGTGCTCTACCGCTGAGCCAAGCGCCCTGGTGTTGCGAGGCGGCGAAGTATGCCGTCGGTCCCCGGGAGTGTCAAC
GGGATCAGCGCGAGCCGTCG

Product: integrase family protein

Products: NA

Alternate protein names: Integrase Family Protein

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSEIRGYIRPRGRKLEAVLVLADGTKRPKATGFSVGEEEQAQRFLDVLLEELRGPAAAAPRPGALTFRAWGEAWIAERKK
RGVISVANEEAQLTYHAFPDLGAIPLAELTRARMLEWVRSLPSRRTENTGELLSPRYVHHVAGTVKRLLQEAVDVDHIQV
NPCTWRPKRDLPAKRDKKGGKRNQGGLEPGEVWQLIHDERIGEDRRVMYALDLLTGMRPGEVAARRWRDLDTTAEPLWRL
HVGTAINSRNSTEKSTKTDVEKVVPVHPLLRELLRSWYAEGWRRFQGRDPTPDDLVVPRGGGGVRTNGHSNKRWKADTER
LGLPPGRSHYETRATFRSLAIAGGAQRADLDLITHPSPREAKDVYTRLEKVWPALCRAVLAIELEAPSPATPGVTRNDTD
GEVAGGIAVAPAAADPEMEKARRLAGLGLFTTSVLNVGAAGFEPATPAV

Sequences:

>Translated_449_residues
MSEIRGYIRPRGRKLEAVLVLADGTKRPKATGFSVGEEEQAQRFLDVLLEELRGPAAAAPRPGALTFRAWGEAWIAERKK
RGVISVANEEAQLTYHAFPDLGAIPLAELTRARMLEWVRSLPSRRTENTGELLSPRYVHHVAGTVKRLLQEAVDVDHIQV
NPCTWRPKRDLPAKRDKKGGKRNQGGLEPGEVWQLIHDERIGEDRRVMYALDLLTGMRPGEVAARRWRDLDTTAEPLWRL
HVGTAINSRNSTEKSTKTDVEKVVPVHPLLRELLRSWYAEGWRRFQGRDPTPDDLVVPRGGGGVRTNGHSNKRWKADTER
LGLPPGRSHYETRATFRSLAIAGGAQRADLDLITHPSPREAKDVYTRLEKVWPALCRAVLAIELEAPSPATPGVTRNDTD
GEVAGGIAVAPAAADPEMEKARRLAGLGLFTTSVLNVGAAGFEPATPAV
>Mature_448_residues
SEIRGYIRPRGRKLEAVLVLADGTKRPKATGFSVGEEEQAQRFLDVLLEELRGPAAAAPRPGALTFRAWGEAWIAERKKR
GVISVANEEAQLTYHAFPDLGAIPLAELTRARMLEWVRSLPSRRTENTGELLSPRYVHHVAGTVKRLLQEAVDVDHIQVN
PCTWRPKRDLPAKRDKKGGKRNQGGLEPGEVWQLIHDERIGEDRRVMYALDLLTGMRPGEVAARRWRDLDTTAEPLWRLH
VGTAINSRNSTEKSTKTDVEKVVPVHPLLRELLRSWYAEGWRRFQGRDPTPDDLVVPRGGGGVRTNGHSNKRWKADTERL
GLPPGRSHYETRATFRSLAIAGGAQRADLDLITHPSPREAKDVYTRLEKVWPALCRAVLAIELEAPSPATPGVTRNDTDG
EVAGGIAVAPAAADPEMEKARRLAGLGLFTTSVLNVGAAGFEPATPAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49629; Mature: 49498

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIRGYIRPRGRKLEAVLVLADGTKRPKATGFSVGEEEQAQRFLDVLLEELRGPAAAAP
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
RPGALTFRAWGEAWIAERKKRGVISVANEEAQLTYHAFPDLGAIPLAELTRARMLEWVRS
CCCCEEEHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
LPSRRTENTGELLSPRYVHHVAGTVKRLLQEAVDVDHIQVNPCTWRPKRDLPAKRDKKGG
HCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHCCCC
KRNQGGLEPGEVWQLIHDERIGEDRRVMYALDLLTGMRPGEVAARRWRDLDTTAEPLWRL
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH
HVGTAINSRNSTEKSTKTDVEKVVPVHPLLRELLRSWYAEGWRRFQGRDPTPDDLVVPRG
HHCHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
GGGVRTNGHSNKRWKADTERLGLPPGRSHYETRATFRSLAIAGGAQRADLDLITHPSPRE
CCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH
AKDVYTRLEKVWPALCRAVLAIELEAPSPATPGVTRNDTDGEVAGGIAVAPAAADPEMEK
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH
ARRLAGLGLFTTSVLNVGAAGFEPATPAV
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEIRGYIRPRGRKLEAVLVLADGTKRPKATGFSVGEEEQAQRFLDVLLEELRGPAAAAP
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
RPGALTFRAWGEAWIAERKKRGVISVANEEAQLTYHAFPDLGAIPLAELTRARMLEWVRS
CCCCEEEHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
LPSRRTENTGELLSPRYVHHVAGTVKRLLQEAVDVDHIQVNPCTWRPKRDLPAKRDKKGG
HCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHCCCC
KRNQGGLEPGEVWQLIHDERIGEDRRVMYALDLLTGMRPGEVAARRWRDLDTTAEPLWRL
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH
HVGTAINSRNSTEKSTKTDVEKVVPVHPLLRELLRSWYAEGWRRFQGRDPTPDDLVVPRG
HHCHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
GGGVRTNGHSNKRWKADTERLGLPPGRSHYETRATFRSLAIAGGAQRADLDLITHPSPRE
CCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH
AKDVYTRLEKVWPALCRAVLAIELEAPSPATPGVTRNDTDGEVAGGIAVAPAAADPEMEK
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH
ARRLAGLGLFTTSVLNVGAAGFEPATPAV
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA