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The map label for this gene is rimM [H]

Identifier: 220917153

GI number: 220917153

Start: 2289260

End: 2289754

Strand: Direct

Name: rimM [H]

Synonym: A2cp1_2050

Alternate gene names: 220917153

Gene position: 2289260-2289754 (Clockwise)

Preceding gene: 220917152

Following gene: 220917154

Centisome position: 45.52

GC content: 77.78

Gene sequence:

>495_bases
GTGGCGCTCGTCCGGATCGGGAAGGTGGTCCGGGCGCTCGGGCTGAAGGGCCACCTGGGCGTGGCCGGGTCGGAGGGCGC
GCTCGGGACGCTCGAGCGCGTCGTGCTCCGGCACGGCGCGGTCGGGCAGGCGGAGCGGAGGGTGCTGGAGGCGCGGCCGC
AGGGGCGCCTCTGGGCGGTGCGGATCGACGGCGTCGCCGATCGCACCGGCGCCGAGGCGCTGGTCGGGGCCGAGGTGCTG
GCGCCCCGCGAGGCCCTGGGCGAGGCGGGAGAGGGCAGGCACTACTGGGGCGACCTGGAGGGCCTGCCGGTGGTGACCGT
CCAGGGCGAGGCGCTCGGGACGGTGACCGGGCTGATGGAGACCGGCGCGGTGGACGTGCTGGTGGTGCAGGGCGCGCGGG
GCGAGCTGCTGGTGCCGCTCGCGCCGTACGTCGAGGTGGATCGCGCGGCGGGTCGCGTGGTGGTGGACCCGCCGGAAGGG
CTCCTGGAGCCGTAG

Upstream 100 bases:

>100_bases
TCGGGCGGGGCGGCAAGACCGCCAAGGCGTTCCGGACCGTGCTCGACTGCGCGGCCCGGCGCCAGGGCCGGCGCGCGGTG
CTCGACATCCTCGACTGACC

Downstream 100 bases:

>100_bases
GCCGGGGGCGAGAGGAGGCCGCCGAGGAAGAGGATCGGACGTGGCGAGGCTCGAGGTCGACATCCTGACGCTGTTCCCGC
GCATGTGCGCGGGGTACCTG

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MALVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAVRIDGVADRTGAEALVGAEVL
APREALGEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLMETGAVDVLVVQGARGELLVPLAPYVEVDRAAGRVVVDPPEG
LLEP

Sequences:

>Translated_164_residues
MALVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAVRIDGVADRTGAEALVGAEVL
APREALGEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLMETGAVDVLVVQGARGELLVPLAPYVEVDRAAGRVVVDPPEG
LLEP
>Mature_163_residues
ALVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAVRIDGVADRTGAEALVGAEVLA
PREALGEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLMETGAVDVLVVQGARGELLVPLAPYVEVDRAAGRVVVDPPEGL
LEP

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=128, Percent_Identity=33.59375, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 16999; Mature: 16868

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAV
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEE
RIDGVADRTGAEALVGAEVLAPREALGEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLME
EECCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCEEEEECCCCHHHHHHHHH
TGAVDVLVVQGARGELLVPLAPYVEVDRAAGRVVVDPPEGLLEP
CCCEEEEEEECCCCCEEEEECCCEEECCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
ALVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAV
CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEE
RIDGVADRTGAEALVGAEVLAPREALGEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLME
EECCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCEEEEECCCCHHHHHHHHH
TGAVDVLVVQGARGELLVPLAPYVEVDRAAGRVVVDPPEGLLEP
CCCEEEEEEECCCCCEEEEECCCEEECCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA