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The map label for this gene is petB [H]

Identifier: 220916660

GI number: 220916660

Start: 1736306

End: 1737661

Strand: Direct

Name: petB [H]

Synonym: A2cp1_1554

Alternate gene names: 220916660

Gene position: 1736306-1737661 (Clockwise)

Preceding gene: 220916659

Following gene: 220916661

Centisome position: 34.52

GC content: 72.2

Gene sequence:

>1356_bases
GTGGCCACCCTGCCCGAACCGTCGGTGAGCACGCCCGCGCCGGCCGCCGCGCCCGGCGTCCACCCTCGCCCGCTGTGGAG
CCTGCGGCCCGCGTCCGACCGCGAGGCGGGCGACGCGATCGTCGCGAACTTCCTCCTCCACTGGTTCCCGGCGAAGGCGC
TGCGCGCCTCGCTGGAGTGGCGGTACTCGCTCTGGCTCGGCACCATCTCGGCGGCGCTGCTGCTGCTGCTGGTGGTCTCC
GGCCTGCCGCTGCTGTTCCTGCACGTGCCCTCGGTGGAGCGGGCCTACGGCTCGGTGAAGGACATCGAGTACGTGGTGAC
GTTCGGCTCCTGGATCCGCTCGGTCCACCGCCTGTCGGCGCACCTCATGGTGGCGGCGGTGTTCCTGCACCTGGTCCGGG
TGTTCCTGACCGGCGCCTACAAGAACGGCGTCGGGCGCGGCCAGCGGCGCGAGTGGAACTGGATCCTCGGCGTGGTGATG
CTGCTCGTCACGCTGTTCCTCTCCTTCACCGGCTACCTGCTGCCCTGGGACCAGCTCGCCTACTGGGCGGTGACGGTCGG
CACCAACATCGCCTCGGCGGTCCCCCTCGTCGGGGAGGAGCTGCGGGAGCTGATGCTCGGCGGCCGCACCATCGACCAGC
CCACGCTGATCCGCTTCTACGTGCTCCACGTCATCGTCCTGCCCGGCGCGCTGTTCGCGCTGCTCGCCTATCACATGTGG
CGGATCCGCAAGGACGGCGGCCTGGCCTGCGCCGACCGCGCGGTGGTGCTGCCGGCGCCGGCGGAGGTCCCGCCCGCCGC
CACCAAGACCTACACGCTCCTCGGCATCGCCCGCGGGACGCACCCGACCATCCGCGCCACCTCGGTGGAGCGGCCCGACA
CCACGGTGAGCGCGGTGCCGGACCTGACCCGCCGCGCGGCCATCGTGGTCCTCGGCACCATGGCGCTGGTGAGCATCCTG
GCGGTGCTGGTGCCCTCGCCGCTGGAGGAGCCCGCCAACCCGCTCGTCACGCCGAACCCGGCGAAGGCGCCCTGGTACTT
CCTGTGGCTGCAGGAGCTGGTGACCGACACGACGTTCCGGATCGGCTCGTTCACCGTCAACGGCGCGTTCCTCGGCGGCG
TGATCCTGCCCGGCATCCTGGTCGCGCTGATGGTCGCGTGGCCGTGGCTCGACCGGAGCCCGGCCGCGGCGGCGGGGCGC
TGGTTCCCGCGGAGCCGCCGCACGCAGAACCTGGTGTTCCTGCTGATCGTGGGGGTGGTGCTCGTCCTCACCTACATCGG
CCTGTTCGCGCGCGGTCCCTACTGGAACCTGTACTGGCCGTGGGAGGCCTGGCCCCAGCTCCCGACGCGGATCTGA

Upstream 100 bases:

>100_bases
TACGACCTGACGCTCGCCGCGGACGACGGGCAGCTGGTCGTCGACCTGGCGCGGCCCGTCGCGCACGACTTCCGCCTGAC
CATCGCGTGAGGAGGCGATC

Downstream 100 bases:

>100_bases
TCATGGAACAGCGCACGCCCTCGCCCTACCGTCGCCGCGACCGGCTCCTCCTCGCCGTCGTCGGCCTGTCGCTGGTCGTC
TCGCTCGGCCTGTTCGCCTG

Product: Cytochrome b/b6 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MATLPEPSVSTPAPAAAPGVHPRPLWSLRPASDREAGDAIVANFLLHWFPAKALRASLEWRYSLWLGTISAALLLLLVVS
GLPLLFLHVPSVERAYGSVKDIEYVVTFGSWIRSVHRLSAHLMVAAVFLHLVRVFLTGAYKNGVGRGQRREWNWILGVVM
LLVTLFLSFTGYLLPWDQLAYWAVTVGTNIASAVPLVGEELRELMLGGRTIDQPTLIRFYVLHVIVLPGALFALLAYHMW
RIRKDGGLACADRAVVLPAPAEVPPAATKTYTLLGIARGTHPTIRATSVERPDTTVSAVPDLTRRAAIVVLGTMALVSIL
AVLVPSPLEEPANPLVTPNPAKAPWYFLWLQELVTDTTFRIGSFTVNGAFLGGVILPGILVALMVAWPWLDRSPAAAAGR
WFPRSRRTQNLVFLLIVGVVLVLTYIGLFARGPYWNLYWPWEAWPQLPTRI

Sequences:

>Translated_451_residues
MATLPEPSVSTPAPAAAPGVHPRPLWSLRPASDREAGDAIVANFLLHWFPAKALRASLEWRYSLWLGTISAALLLLLVVS
GLPLLFLHVPSVERAYGSVKDIEYVVTFGSWIRSVHRLSAHLMVAAVFLHLVRVFLTGAYKNGVGRGQRREWNWILGVVM
LLVTLFLSFTGYLLPWDQLAYWAVTVGTNIASAVPLVGEELRELMLGGRTIDQPTLIRFYVLHVIVLPGALFALLAYHMW
RIRKDGGLACADRAVVLPAPAEVPPAATKTYTLLGIARGTHPTIRATSVERPDTTVSAVPDLTRRAAIVVLGTMALVSIL
AVLVPSPLEEPANPLVTPNPAKAPWYFLWLQELVTDTTFRIGSFTVNGAFLGGVILPGILVALMVAWPWLDRSPAAAAGR
WFPRSRRTQNLVFLLIVGVVLVLTYIGLFARGPYWNLYWPWEAWPQLPTRI
>Mature_450_residues
ATLPEPSVSTPAPAAAPGVHPRPLWSLRPASDREAGDAIVANFLLHWFPAKALRASLEWRYSLWLGTISAALLLLLVVSG
LPLLFLHVPSVERAYGSVKDIEYVVTFGSWIRSVHRLSAHLMVAAVFLHLVRVFLTGAYKNGVGRGQRREWNWILGVVML
LVTLFLSFTGYLLPWDQLAYWAVTVGTNIASAVPLVGEELRELMLGGRTIDQPTLIRFYVLHVIVLPGALFALLAYHMWR
IRKDGGLACADRAVVLPAPAEVPPAATKTYTLLGIARGTHPTIRATSVERPDTTVSAVPDLTRRAAIVVLGTMALVSILA
VLVPSPLEEPANPLVTPNPAKAPWYFLWLQELVTDTTFRIGSFTVNGAFLGGVILPGILVALMVAWPWLDRSPAAAAGRW
FPRSRRTQNLVFLLIVGVVLVLTYIGLFARGPYWNLYWPWEAWPQLPTRI

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=302, Percent_Identity=28.1456953642384, Blast_Score=109, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6226529, Length=181, Percent_Identity=27.6243093922652, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6226532, Length=174, Percent_Identity=28.1609195402299, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 49667; Mature: 49536

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLPEPSVSTPAPAAAPGVHPRPLWSLRPASDREAGDAIVANFLLHWFPAKALRASLEW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
RYSLWLGTISAALLLLLVVSGLPLLFLHVPSVERAYGSVKDIEYVVTFGSWIRSVHRLSA
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
HLMVAAVFLHLVRVFLTGAYKNGVGRGQRREWNWILGVVMLLVTLFLSFTGYLLPWDQLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YWAVTVGTNIASAVPLVGEELRELMLGGRTIDQPTLIRFYVLHVIVLPGALFALLAYHMW
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRKDGGLACADRAVVLPAPAEVPPAATKTYTLLGIARGTHPTIRATSVERPDTTVSAVP
HHCCCCCCEECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCHHHHHH
DLTRRAAIVVLGTMALVSILAVLVPSPLEEPANPLVTPNPAKAPWYFLWLQELVTDTTFR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE
IGSFTVNGAFLGGVILPGILVALMVAWPWLDRSPAAAAGRWFPRSRRTQNLVFLLIVGVV
ECCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH
LVLTYIGLFARGPYWNLYWPWEAWPQLPTRI
HHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
ATLPEPSVSTPAPAAAPGVHPRPLWSLRPASDREAGDAIVANFLLHWFPAKALRASLEW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
RYSLWLGTISAALLLLLVVSGLPLLFLHVPSVERAYGSVKDIEYVVTFGSWIRSVHRLSA
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
HLMVAAVFLHLVRVFLTGAYKNGVGRGQRREWNWILGVVMLLVTLFLSFTGYLLPWDQLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YWAVTVGTNIASAVPLVGEELRELMLGGRTIDQPTLIRFYVLHVIVLPGALFALLAYHMW
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIRKDGGLACADRAVVLPAPAEVPPAATKTYTLLGIARGTHPTIRATSVERPDTTVSAVP
HHCCCCCCEECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCHHHHHH
DLTRRAAIVVLGTMALVSILAVLVPSPLEEPANPLVTPNPAKAPWYFLWLQELVTDTTFR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE
IGSFTVNGAFLGGVILPGILVALMVAWPWLDRSPAAAAGRWFPRSRRTQNLVFLLIVGVV
ECCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH
LVLTYIGLFARGPYWNLYWPWEAWPQLPTRI
HHHHHHHHHHCCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA