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The map label for this gene is prdB [H]

Identifier: 220916385

GI number: 220916385

Start: 1431831

End: 1432268

Strand: Direct

Name: prdB [H]

Synonym: A2cp1_1279

Alternate gene names: 220916385

Gene position: 1431831-1432268 (Clockwise)

Preceding gene: 220916384

Following gene: 220916386

Centisome position: 28.47

GC content: 74.2

Gene sequence:

>438_bases
ATGGCGGACGACGCCGTCCCGAAGCCGCTCGAGCTGTCCCGCTACTGCGTGCCGTTCACGCCGTTCGCCGGCAAGCTGGA
GGAGGCCAGCGTCTGCCTCGTCTCCACCGCGGCGGTGCGGCTCGCCGGCGACCGTCCGTTCGACACCGGCGGCGACACCA
CCTGGCGGGCCATCCCAGGCGACGCGGAGGCGAAGGACCTCCGCTACGACGACACGCACTACGACCACGCCTGCGTGGAC
GCGGACCTGAACTGCGTGTTCCCGATCGACCGCGTCCGGGAGCTGGCGCGGGACGGGCGGGTGGGCGGGCTCACCGCCCG
CCACTTCTCGCTCGGCTACAGCCAGGCGCTCCGCGAGCTGCGCGAGCGGACCATCCCGGCGCTGGTCCGCGAGATCGACC
GCGAGCGGCCGGGCGCGGTGCTGCTCACCGGCGGCTGA

Upstream 100 bases:

>100_bases
CAAGGTCGCCTACGTGGACATCCACGACATCGGCGAGCAGCCGCCCACCGACAAGATCATGCAGGCGCTCGACAAGCTGA
AGTAGCCGAGGAGGCCCGCC

Downstream 100 bases:

>100_bases
CGCCTGTGCCACCGCACGGTGGTCACCGTGCAGCGCAGCATCGAGCTGGTGGGCATCCCGACGGTGGTGATCACGGTCGA
GCCGGAGGAGACGCTGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: D-proline reductase 26 kDa subunit [H]

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MADDAVPKPLELSRYCVPFTPFAGKLEEASVCLVSTAAVRLAGDRPFDTGGDTTWRAIPGDAEAKDLRYDDTHYDHACVD
ADLNCVFPIDRVRELARDGRVGGLTARHFSLGYSQALRELRERTIPALVREIDRERPGAVLLTGG

Sequences:

>Translated_145_residues
MADDAVPKPLELSRYCVPFTPFAGKLEEASVCLVSTAAVRLAGDRPFDTGGDTTWRAIPGDAEAKDLRYDDTHYDHACVD
ADLNCVFPIDRVRELARDGRVGGLTARHFSLGYSQALRELRERTIPALVREIDRERPGAVLLTGG
>Mature_144_residues
ADDAVPKPLELSRYCVPFTPFAGKLEEASVCLVSTAAVRLAGDRPFDTGGDTTWRAIPGDAEAKDLRYDDTHYDHACVDA
DLNCVFPIDRVRELARDGRVGGLTARHFSLGYSQALRELRERTIPALVREIDRERPGAVLLTGG

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022787 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 15915; Mature: 15784

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDAVPKPLELSRYCVPFTPFAGKLEEASVCLVSTAAVRLAGDRPFDTGGDTTWRAIPG
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEHEEEEECCCCCCCCCCCCEEEECCC
DAEAKDLRYDDTHYDHACVDADLNCVFPIDRVRELARDGRVGGLTARHFSLGYSQALREL
CCCCCCCCCCCCCCCCEEECCCCEEEECHHHHHHHHHCCCCCCEEHHHHHCCHHHHHHHH
RERTIPALVREIDRERPGAVLLTGG
HHHHHHHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure 
ADDAVPKPLELSRYCVPFTPFAGKLEEASVCLVSTAAVRLAGDRPFDTGGDTTWRAIPG
CCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEHEEEEECCCCCCCCCCCCEEEECCC
DAEAKDLRYDDTHYDHACVDADLNCVFPIDRVRELARDGRVGGLTARHFSLGYSQALREL
CCCCCCCCCCCCCCCCEEECCCCEEEECHHHHHHHHHCCCCCCEEHHHHHCCHHHHHHHH
RERTIPALVREIDRERPGAVLLTGG
HHHHHHHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]