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The map label for this gene is radC [C]

Identifier: 220916229

GI number: 220916229

Start: 1255808

End: 1256479

Strand: Reverse

Name: radC [C]

Synonym: A2cp1_1122

Alternate gene names: 220916229

Gene position: 1256479-1255808 (Counterclockwise)

Preceding gene: 220916230

Following gene: 220916228

Centisome position: 24.98

GC content: 71.28

Gene sequence:

>672_bases
ATGGAGTCGAAGACTGTCGAAACGCCTAGCGCTCACGAGCGCCTGGAGCTGCTCGGAGCGCGCGCCCTCTCGGACGCCGA
GCTCGTCGCGGTCCTGCTCGGCCCCACGGCCGGCGCGAACAACGTGCGCGACGCCGCTATCCGCTTGCTCGACGAGAAGC
CGCTCCCCGAGATCGCGTGGGCCTCCACCGACGACCTGCGCCAGGTGACCGGGATCGGGCCCGCGCGCGCGGCGGCGCTC
GTCGCCGCGTTCGAGCTCGGCCGGCGCGGTGCGTGGTCGCCGCCGAAGCGCGGGGAGCGACTTCAGGACCCGGCGCGCGT
GTACGAGCTGCTCCGCGACGTCGCGCACGCCGAGCGTGAGCAGTTCCACGTCGTGCTCCTCGACGTACGCTGCCGGCTCA
TCAAGACGGCGAAGATCTCCGAGGGCTCGCTCACCCAGTGCCCCGTGGCGCCACGAGACGTCCTCCGCGAGGCACTGCGC
GTCGGCGCGCACGGAGTCATCTTCGCGCACAATCATCCCAGCGGATCTGCCGACCCGTCGCCGGAAGACCATGACCTCAC
GGAGCGTCTCAGGGCGGCATCCGAGCTGGTCGGGTTGACGGCAAGGGACCATCTGATCCTCGCGAGCGGCGGGTACTACT
CGTTCGTCGAGGCGGGCCGCTGGCGCAGGTGA

Upstream 100 bases:

>100_bases
GCTGGTCCGCCGGAGAGTTCGCTCCCACCTCCCGTCGGCGCCGCCGCCTCCCTGACGGGGAAGGCGGCGCGGTGCCGCCG
TCACACAGACGAGGTGGCCC

Downstream 100 bases:

>100_bases
CCGCCGCACCCTCTCCCCACCGGTCGCGGGCACCGCGCCGCCTCACGCGTGGCGCGCGGCGCGGTGCCGCGCTCGTTCGA
CAGGGAGATCTAAGCCATGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MESKTVETPSAHERLELLGARALSDAELVAVLLGPTAGANNVRDAAIRLLDEKPLPEIAWASTDDLRQVTGIGPARAAAL
VAAFELGRRGAWSPPKRGERLQDPARVYELLRDVAHAEREQFHVVLLDVRCRLIKTAKISEGSLTQCPVAPRDVLREALR
VGAHGVIFAHNHPSGSADPSPEDHDLTERLRAASELVGLTARDHLILASGGYYSFVEAGRWRR

Sequences:

>Translated_223_residues
MESKTVETPSAHERLELLGARALSDAELVAVLLGPTAGANNVRDAAIRLLDEKPLPEIAWASTDDLRQVTGIGPARAAAL
VAAFELGRRGAWSPPKRGERLQDPARVYELLRDVAHAEREQFHVVLLDVRCRLIKTAKISEGSLTQCPVAPRDVLREALR
VGAHGVIFAHNHPSGSADPSPEDHDLTERLRAASELVGLTARDHLILASGGYYSFVEAGRWRR
>Mature_223_residues
MESKTVETPSAHERLELLGARALSDAELVAVLLGPTAGANNVRDAAIRLLDEKPLPEIAWASTDDLRQVTGIGPARAAAL
VAAFELGRRGAWSPPKRGERLQDPARVYELLRDVAHAEREQFHVVLLDVRCRLIKTAKISEGSLTQCPVAPRDVLREALR
VGAHGVIFAHNHPSGSADPSPEDHDLTERLRAASELVGLTARDHLILASGGYYSFVEAGRWRR

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=211, Percent_Identity=33.6492890995261, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI2367100, Length=114, Percent_Identity=42.9824561403509, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788997, Length=106, Percent_Identity=41.5094339622642, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788312, Length=110, Percent_Identity=40, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24292; Mature: 24292

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESKTVETPSAHERLELLGARALSDAELVAVLLGPTAGANNVRDAAIRLLDEKPLPEIAW
CCCCCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
ASTDDLRQVTGIGPARAAALVAAFELGRRGAWSPPKRGERLQDPARVYELLRDVAHAERE
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QFHVVLLDVRCRLIKTAKISEGSLTQCPVAPRDVLREALRVGAHGVIFAHNHPSGSADPS
HEEEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
PEDHDLTERLRAASELVGLTARDHLILASGGYYSFVEAGRWRR
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHCCCCCC
>Mature Secondary Structure
MESKTVETPSAHERLELLGARALSDAELVAVLLGPTAGANNVRDAAIRLLDEKPLPEIAW
CCCCCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
ASTDDLRQVTGIGPARAAALVAAFELGRRGAWSPPKRGERLQDPARVYELLRDVAHAERE
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QFHVVLLDVRCRLIKTAKISEGSLTQCPVAPRDVLREALRVGAHGVIFAHNHPSGSADPS
HEEEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
PEDHDLTERLRAASELVGLTARDHLILASGGYYSFVEAGRWRR
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA