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The map label for this gene is rtcB [C]

Identifier: 220916117

GI number: 220916117

Start: 1129166

End: 1130632

Strand: Reverse

Name: rtcB [C]

Synonym: A2cp1_1004

Alternate gene names: 220916117

Gene position: 1130632-1129166 (Counterclockwise)

Preceding gene: 220916118

Following gene: 220916116

Centisome position: 22.48

GC content: 76.55

Gene sequence:

>1467_bases
ATGACGACGGCGCGCCAGGGCGAGCACGTGCCGCTGCGGCGGATCGAGGGCGACCTCTGGGAGATCCCGCGGCACGGCGG
GATGAAGGTGCCCGGGCGCGTCTACTCCCCGGGGCCGCCGGCCCCGGACGATCCGGCCCTGCAGCAGGTGGCGAACGTGG
CCCACCTGCCGGGGATCCTGCGCTGGTCGCTGGCCATGCCCGACGTCCACTGGGGATACGGGTTCCCCCTCGGCGGCGTG
GCGGCGGTGGACGCGGAGCACGGCGCCGTGTCGCCGGGCGGGGTGGGCTACGACATCAACTGCGGCGTGCGCGTGGTCAC
CACCAGGCTCGACGCGGAGGCGCTCCGGCCGCGGCTCCACGCGCTCGCCGCCCGGATCTACCGCGACGTCCCCACCGGCG
TGGGCGCGAGCGCCGCGATCCCGAGGCTGACCTCGCGGGAGCTGGACGAGGTGCTGGCGGAGGGGGCGCGCTGGGCGGTG
GCGCGCGGCTTCCGCGCCGCGGCGGACGACGCCGATCGCTGCGAGGAGGGCGGGCGGCTCGCCGGCGCGGATCCCGCCGC
GGTCAGCGCGCGGGCCCGCGAGCGCGGCAGCGACCAGCTCGGCACGCTCGGCAGCGGCAATCACTTTCTCGAGCTGGACC
GGGTCGCCCGGATCCACGACGACGCCGCCGCCGAGGCGTTCGGGCTGTTCCCCGGGCAGCTCGTCGTCCAGATCCACTCC
GGCTCGCGCGGCCTCGGCTACCAGGTGTGCGACGAGGCGCTCGCGGAGCTGGCGCCGCGGCTGGCGTCCTACGGCCCGGA
CTACGCCGCCCTGCCCGACCGGCAGCTCGCCTGCGCCCCCGTCGGCAGTCCGGAGGGGCGCCGCTACCTCGCGGCCATGC
AGGCGGCGGCGAACTTCGCCTGGGCCAACCGCCAGGTGATGACCGGCCTGGCGGTGCGGGCGCTGCTCGAGACGCTCGGC
GTCTCCGACCGCGAGCTGGGCGCGCGGCTCCTGTACGACGTCTGCCACAACGTGGCCAAGCTCGAGGACCACCTGGTGGA
CGGCGGCGTGCGGCGGGTGCTCGTCCACCGCAAGGGCGCCACCCGCGCGTTCGGCCCCGGCGATCCGCGCGTCCCGGCGC
CGTACCGCGACGTCGGCCAGCCGGTGCTCATCCCCGGGGACATGGGCCGGTACTCCTACGTCCTCGCCGGGACCGAGAAG
GCCATGCGCGACACGTTCGGCAGCTCGTGCCACGGCGCGGGGCGCCTCCTCTCGCGCGGCGAGGCGCTGCGACGCGCCCG
GGGGCGCTCCATCGCGCGGGAGCTGGCCGATCGCGGCATCGAGGTCCTCGCGCGGGGGCGCAAGACCCTCGGCGAGGAGA
TGAGCGAGGCGTACAAGGACGTGGCCCAGGTGGTGGCCGTGATGGACGGGGCGGGCATCTCCCGGCTGGTGGCGCGGCTC
GACCCGCTCGCGGTGGTCAAGGGCTGA

Upstream 100 bases:

>100_bases
TGAAGGCGGTCACCTGGCACGCGGCGCGGCTCGAGCCGGAGGGCGGCGGCTGGGTGGCGCAGGCGGTGCTGGACATCTGA
CGGATGGGGCGGGGGACGCG

Downstream 100 bases:

>100_bases
GGACCGTCGGGCGGACCCGCTTCGCCGGGCCGCCGCGCGTGCCTAGCTTGGGAGCATGGGCGACGCGGGCGATCCGCCCC
GGCAACCACGTCCGAGGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MTTARQGEHVPLRRIEGDLWEIPRHGGMKVPGRVYSPGPPAPDDPALQQVANVAHLPGILRWSLAMPDVHWGYGFPLGGV
AAVDAEHGAVSPGGVGYDINCGVRVVTTRLDAEALRPRLHALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAV
ARGFRAAADDADRCEEGGRLAGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFPGQLVVQIHS
GSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYLAAMQAAANFAWANRQVMTGLAVRALLETLG
VSDRELGARLLYDVCHNVAKLEDHLVDGGVRRVLVHRKGATRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEK
AMRDTFGSSCHGAGRLLSRGEALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQVVAVMDGAGISRLVARL
DPLAVVKG

Sequences:

>Translated_488_residues
MTTARQGEHVPLRRIEGDLWEIPRHGGMKVPGRVYSPGPPAPDDPALQQVANVAHLPGILRWSLAMPDVHWGYGFPLGGV
AAVDAEHGAVSPGGVGYDINCGVRVVTTRLDAEALRPRLHALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAV
ARGFRAAADDADRCEEGGRLAGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFPGQLVVQIHS
GSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYLAAMQAAANFAWANRQVMTGLAVRALLETLG
VSDRELGARLLYDVCHNVAKLEDHLVDGGVRRVLVHRKGATRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEK
AMRDTFGSSCHGAGRLLSRGEALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQVVAVMDGAGISRLVARL
DPLAVVKG
>Mature_487_residues
TTARQGEHVPLRRIEGDLWEIPRHGGMKVPGRVYSPGPPAPDDPALQQVANVAHLPGILRWSLAMPDVHWGYGFPLGGVA
AVDAEHGAVSPGGVGYDINCGVRVVTTRLDAEALRPRLHALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVA
RGFRAAADDADRCEEGGRLAGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFPGQLVVQIHSG
SRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYLAAMQAAANFAWANRQVMTGLAVRALLETLGV
SDRELGARLLYDVCHNVAKLEDHLVDGGVRRVLVHRKGATRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEKA
MRDTFGSSCHGAGRLLSRGEALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQVVAVMDGAGISRLVARLD
PLAVVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=447, Percent_Identity=47.2035794183445, Blast_Score=405, Evalue=1e-113,
Organism=Escherichia coli, GI2367224, Length=472, Percent_Identity=29.0254237288136, Blast_Score=124, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17506665, Length=447, Percent_Identity=46.5324384787472, Blast_Score=401, Evalue=1e-112,
Organism=Drosophila melanogaster, GI24585217, Length=447, Percent_Identity=46.9798657718121, Blast_Score=389, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 51903; Mature: 51771

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTARQGEHVPLRRIEGDLWEIPRHGGMKVPGRVYSPGPPAPDDPALQQVANVAHLPGIL
CCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH
RWSLAMPDVHWGYGFPLGGVAAVDAEHGAVSPGGVGYDINCGVRVVTTRLDAEALRPRLH
HHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEEECCHHHHHHHHH
ALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVARGFRAAADDADRCEEGGRL
HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCHHHHHHCCCC
AGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFPGQLVVQIHS
CCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECC
GSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYLAAMQAAANFA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHH
WANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDHLVDGGVRRVLVHRKGA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
TRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEKAMRDTFGSSCHGAGRLLSRG
CCCCCCCCCCCCCCHHHCCCCEEECCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHH
EALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQVVAVMDGAGISRLVARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
DPLAVVKG
CCHHCCCC
>Mature Secondary Structure 
TTARQGEHVPLRRIEGDLWEIPRHGGMKVPGRVYSPGPPAPDDPALQQVANVAHLPGIL
CCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH
RWSLAMPDVHWGYGFPLGGVAAVDAEHGAVSPGGVGYDINCGVRVVTTRLDAEALRPRLH
HHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEEECCHHHHHHHHH
ALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVARGFRAAADDADRCEEGGRL
HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCHHHHHHCCCC
AGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFPGQLVVQIHS
CCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECC
GSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYLAAMQAAANFA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHH
WANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDHLVDGGVRRVLVHRKGA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
TRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEKAMRDTFGSSCHGAGRLLSRG
CCCCCCCCCCCCCCHHHCCCCEEECCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHH
EALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQVVAVMDGAGISRLVARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
DPLAVVKG
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA