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The map label for this gene is ygiD [H]

Identifier: 220916103

GI number: 220916103

Start: 1115729

End: 1116523

Strand: Direct

Name: ygiD [H]

Synonym: A2cp1_0990

Alternate gene names: 220916103

Gene position: 1115729-1116523 (Clockwise)

Preceding gene: 220916102

Following gene: 220916105

Centisome position: 22.18

GC content: 77.36

Gene sequence:

>795_bases
ATGGAGCGGCAGGGCGCGGGGCGGCGGATGCCGGTGCTGTTCGTGGGGCACGGCTCGCCCATGAACGCGATCGAGGACAA
CCGGTGGAGCTGCGCGTTCCGCGGCCTCGCGCCGCTGCTCCCGCGGCCCCGCGCGATCCTGGCGGTGTCGGCCCACTTCG
TCACCGAGGGCAGCGTCCTCACCGGCCAGGAGCGGCCCGAGACCGTCCACGACTTCGGCGGCTTCCCCGACGCGCTGTTC
CGCGTCCGCTACCCGGCCCCGGGCGCTCCGGAGCTGGCGCGGCGCGCGGCGGCACTGGTCGCGGGGGACGGCGCCCGGGT
GGTGGACGCCTGGGGGCTCGACCACGGCACCTGGAGCGTGCTCGTGCACCTGTTCCCGGCGGCCGACGTTCCGGTGGTGC
AGCTTTCCATCTCCGCGGAGCTGGACCCGGCCGCCCACCTCGCGCTGGGCCGGGCGCTGGCGCCGCTCCGCGACGAGGGC
GTGCTGGTGATGGGCAGCGGCAACCTGGTGCACGACCTGCGGCACGCGTTCGACGCGTGGCGCAGGGGCGACGCCACCAC
GCCGGCGTGGGCCGCGCGGTTCGACGCGGACGCGGCCGCCGCGCTGGAGCGCGGCGACGCGCGCTGGCTGGTGGAGGCGC
TCGGGACGCCGGACGGCCGGCGCGCGCACCCCACGCCCGAGCACTACCTGCCGCTGCTGTACGCGGCCGGGGCGGCGGGC
GCGGACCCGGTGCGGTTCCCCATCACCGGCTTCGACATGGGCTCGCTGTCGATGCGCGCCGCGCTGTTCGGCTAG

Upstream 100 bases:

>100_bases
CTGGTGGGGGAGAAGGTGGAGATCACGATCGAGCTCGAGGCGGTGAAGCAGGCCGCGAAGCAGTCGGACGCGGCGTAGGC
CGCGGCACGTGGGAGGCGCG

Downstream 100 bases:

>100_bases
CGCGTCACTGCGCGGCGGGAGGCTCCTGCGGCGGCGGCGGCCGGTCGTCGCGCGCCGACTCCTCCAGCTTCCGCTCCAGC
TCGTGCAGGCGCGCGGTGAT

Product: Extradiol ring-cleavage dioxygenase class III protein subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MERQGAGRRMPVLFVGHGSPMNAIEDNRWSCAFRGLAPLLPRPRAILAVSAHFVTEGSVLTGQERPETVHDFGGFPDALF
RVRYPAPGAPELARRAAALVAGDGARVVDAWGLDHGTWSVLVHLFPAADVPVVQLSISAELDPAAHLALGRALAPLRDEG
VLVMGSGNLVHDLRHAFDAWRRGDATTPAWAARFDADAAAALERGDARWLVEALGTPDGRRAHPTPEHYLPLLYAAGAAG
ADPVRFPITGFDMGSLSMRAALFG

Sequences:

>Translated_264_residues
MERQGAGRRMPVLFVGHGSPMNAIEDNRWSCAFRGLAPLLPRPRAILAVSAHFVTEGSVLTGQERPETVHDFGGFPDALF
RVRYPAPGAPELARRAAALVAGDGARVVDAWGLDHGTWSVLVHLFPAADVPVVQLSISAELDPAAHLALGRALAPLRDEG
VLVMGSGNLVHDLRHAFDAWRRGDATTPAWAARFDADAAAALERGDARWLVEALGTPDGRRAHPTPEHYLPLLYAAGAAG
ADPVRFPITGFDMGSLSMRAALFG
>Mature_264_residues
MERQGAGRRMPVLFVGHGSPMNAIEDNRWSCAFRGLAPLLPRPRAILAVSAHFVTEGSVLTGQERPETVHDFGGFPDALF
RVRYPAPGAPELARRAAALVAGDGARVVDAWGLDHGTWSVLVHLFPAADVPVVQLSISAELDPAAHLALGRALAPLRDEG
VLVMGSGNLVHDLRHAFDAWRRGDATTPAWAARFDADAAAALERGDARWLVEALGTPDGRRAHPTPEHYLPLLYAAGAAG
ADPVRFPITGFDMGSLSMRAALFG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=264, Percent_Identity=46.969696969697, Blast_Score=237, Evalue=7e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28123; Mature: 28123

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQGAGRRMPVLFVGHGSPMNAIEDNRWSCAFRGLAPLLPRPRAILAVSAHFVTEGSVL
CCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEEECCCEE
TGQERPETVHDFGGFPDALFRVRYPAPGAPELARRAAALVAGDGARVVDAWGLDHGTWSV
ECCCCCCHHHHCCCCCHHHEEEECCCCCCHHHHHHHHHEEECCCCEEEEECCCCCCHHEE
LVHLFPAADVPVVQLSISAELDPAAHLALGRALAPLRDEGVLVMGSGNLVHDLRHAFDAW
HHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
RRGDATTPAWAARFDADAAAALERGDARWLVEALGTPDGRRAHPTPEHYLPLLYAAGAAG
HCCCCCCCHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHEEECCCCC
ADPVRFPITGFDMGSLSMRAALFG
CCCEEEEECCCCCCCHHHHHHHCC
>Mature Secondary Structure
MERQGAGRRMPVLFVGHGSPMNAIEDNRWSCAFRGLAPLLPRPRAILAVSAHFVTEGSVL
CCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEEECCCEE
TGQERPETVHDFGGFPDALFRVRYPAPGAPELARRAAALVAGDGARVVDAWGLDHGTWSV
ECCCCCCHHHHCCCCCHHHEEEECCCCCCHHHHHHHHHEEECCCCEEEEECCCCCCHHEE
LVHLFPAADVPVVQLSISAELDPAAHLALGRALAPLRDEGVLVMGSGNLVHDLRHAFDAW
HHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
RRGDATTPAWAARFDADAAAALERGDARWLVEALGTPDGRRAHPTPEHYLPLLYAAGAAG
HCCCCCCCHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHEEECCCCC
ADPVRFPITGFDMGSLSMRAALFG
CCCEEEEECCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]