Click here to switch to the map view.

The map label for this gene is ycaN [C]

Identifier: 220916101

GI number: 220916101

Start: 1114111

End: 1115013

Strand: Reverse

Name: ycaN [C]

Synonym: A2cp1_0988

Alternate gene names: 220916101

Gene position: 1115013-1114111 (Counterclockwise)

Preceding gene: 220916104

Following gene: 220916098

Centisome position: 22.17

GC content: 74.64

Gene sequence:

>903_bases
ATGGACCTCGACCTGCTCCGCGTGTTCACCGCCGTCGCGCGCACCGCCAGCTTCTCCGCCGCCGCGCGCGAGCTGCGCAT
CCCGAAGTCGTCGGCCAGCCGTGCCGTGGCGCGGCTCGAGGAGGAGCTCGGGGTGCAGCTCCTGTTCCGCACCACGCGCC
AGGTGTCGCTGAGCGCGGCCGGCACCGGGCTGTACGACCGGATCGCCCCGCTGCTCCAGGGCCTGGAGAGCGCGCTCGGC
GAGCTGCCGGAGCGCGAGGAGGAGCCGTCGGGGCTGCTGCGCGTCACTGCGCCGGTGGACATCGGCATCTTCTTCCTGGC
CGAGCTCACCGCGCGCTACACGCTGCGCTACCCGGCGGTCTCGGTGGAGCTCGACCTGAGCAGCCGGCTGGTGGACCTGG
TGGCGGAGGGCTTCGACGTGGCGCTGCGCGTGGCGCCGGGGCTGAAGGACTCGACGCTGGTGGCGAGGAAGGCCTCCCCG
GTGCAGCTGCAGCTGTTCGCCTCCCCGCTCTACCTGGCGCGGCGCGGGACGCCGCGCACCGAGGTGGAGCTCGAGGCGCA
CGACTGGGTGACGTTCGGGACGCAGGCCCGCAAGCTGCGGCTCGAGGGGGCGCGCGGGACCGTGGAGGTGACGCCCCGCT
CGCGGATCCTGTGCCCGGAGCTGCTGTTCGTGCGCGAGGCGATGCGGGCCGGCGCCGGCATCGGCCTGCTGCCCTCGTTC
ATGGCGGAGCAGGACCTGGCGGCTGGGACGCTGGTGCGCGTGCTGCCGCGCCTGGTGCGGAGCGGCGGCAACCTCTACGT
GGTGACGCCCGCGACGCGCCACGTCCCGCGCAAGGTGAGCGCGTTCCGCGACCTCGTGCTGGAGCTCGTCAGGAGCCGGC
CGCTCGGGCCGCCGCTGCCGTGA

Upstream 100 bases:

>100_bases
GTTCTCGCGGGTCGGCTCCTCGCTGACGGGAGGAATCTGATACCGTTCCGTTCATGGCGCAATCAGCCGCACAGGGAATG
AGTGTTGCGCTGGAGGAACG

Downstream 100 bases:

>100_bases
CGCCGGCCGGTGCGGGCGCGCGCGCCAGCACCTCGTCGCCGATCGCGGCGAGCGCGGCCGCGCCGCTCGACCGGGGCGCG
TGCTCGAACACGGTCCGGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAAGTGLYDRIAPLLQGLESALG
ELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAVSVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASP
VQLQLFASPLYLARRGTPRTEVELEAHDWVTFGTQARKLRLEGARGTVEVTPRSRILCPELLFVREAMRAGAGIGLLPSF
MAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVLELVRSRPLGPPLP

Sequences:

>Translated_300_residues
MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAAGTGLYDRIAPLLQGLESALG
ELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAVSVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASP
VQLQLFASPLYLARRGTPRTEVELEAHDWVTFGTQARKLRLEGARGTVEVTPRSRILCPELLFVREAMRAGAGIGLLPSF
MAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVLELVRSRPLGPPLP
>Mature_300_residues
MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAAGTGLYDRIAPLLQGLESALG
ELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAVSVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASP
VQLQLFASPLYLARRGTPRTEVELEAHDWVTFGTQARKLRLEGARGTVEVTPRSRILCPELLFVREAMRAGAGIGLLPSF
MAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVLELVRSRPLGPPLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=31.7073170731707, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789639, Length=279, Percent_Identity=30.4659498207885, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=29.4736842105263, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87081978, Length=273, Percent_Identity=31.5018315018315, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693193, Length=281, Percent_Identity=30.2491103202847, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789173, Length=298, Percent_Identity=27.1812080536913, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789440, Length=268, Percent_Identity=25, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786713, Length=275, Percent_Identity=31.2727272727273, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=309, Percent_Identity=26.8608414239482, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790011, Length=300, Percent_Identity=23, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=136, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788748, Length=150, Percent_Identity=34, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32710; Mature: 32710

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHEEEECC
GTGLYDRIAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHEEECCEE
SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT
EEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCHHHHHHCCCCCC
EVELEAHDWVTFGTQARKLRLEGARGTVEVTPRSRILCPELLFVREAMRAGAGIGLLPSF
EEEEECCCCEEECCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
MAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVLELVRSRPLGPPLP
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHEEEECC
GTGLYDRIAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHEEECCEE
SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT
EEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCHHHHHHCCCCCC
EVELEAHDWVTFGTQARKLRLEGARGTVEVTPRSRILCPELLFVREAMRAGAGIGLLPSF
EEEEECCCCEEECCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
MAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVLELVRSRPLGPPLP
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]