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The map label for this gene is 220916048

Identifier: 220916048

GI number: 220916048

Start: 1052813

End: 1055182

Strand: Direct

Name: 220916048

Synonym: A2cp1_0935

Alternate gene names: NA

Gene position: 1052813-1055182 (Clockwise)

Preceding gene: 220916046

Following gene: 220916049

Centisome position: 20.93

GC content: 78.86

Gene sequence:

>2370_bases
GTGCCCGACCGGCTGGAGCGATACCGCGCCATGCGCGACCCGGGCCGGACGCCGGAGCCGTTCGGCGGCGGTGCGCCCGG
CGAGGACGGATCCGGCTCGGCGCGGGCGTTCGTCGTCCAGAAGCACGCGGCCCGGCGCCTCCACTGGGACTTCCGGCTCG
AGCTGGGCGGGACGCTGCGGAGCTGGGCGGTGCCGAAGGGCCCCTCCGCCGATCCCTCCGACCGGCGCATGGCCATCGAG
GTGGAGGATCACCCGGTCGAGTACGCGGACTTCGAGGGGATCATCCCCGCCGGCAACTACGGCGCAGGGGCGGTGATCGT
GTGGGATCGCGGCGCGTGGTGGCCGGTGGGCGATCCCGAGGACGGCCTGGCCCGCGGCAAGCTCGTGTTCCGCCTGAGGG
GCCACAAGCTGCGCGGAGAGTGGACGCTGGTCCGGACCCGCGCCGGGGACGGCGGGAAGCGCCAGTGGCTGCTCCTGAAG
CACCGCGGCGATCCGTTCGCCGGGCCGGGGCGGCCGTTCCCGGAGGCGTCCGTGCTCTCGGGGCGCACCGTGGAGGAGCT
CGCGGCCGGCACGAGCCGGGCCGAGGCCGCCGCCCGCGAGGCCGCGCGCCTCGGCGCGCCGGCGCGTCCGCTCCCGCGGC
GGGGGCCCGCGCCGATGGCGCCGGGCGCGCGCCGGGCGCCGTTCGACCGCGCGGGCTGGCTGTTCGAGGTGGCGCAGGGC
GGCCAGCGCGTGTCGGCGCGCCGCGAGGGCACCGGGGCGGTGCTGCGCTCGCCGCAGGGTGAGGACCTCGGGCCGCGCTT
CCCGGAGGTGGCGCTCGCCGTGGCGCTCCTGCCCGGCGATCCGGTGCTCGACGGCGAGCTGGTGGTGCTCGACGACGAGG
GGCGGGCGTCGGCCGAGGCGCTCGAGGCTCGCGCCCGCACCGGCGCGAGCGCGGCCGCCGGCGCCGCGCTGCAGCGGCCG
GCGACGCTGTTCGCGTTCGACCTCCTGGCCCTGGGTGGGCGCGACCTGCGCGCGCTGGCGCTCGCCGACCGCAAGCGGCT
GCTCGCCGAGGTGGCGCCCGCGGTCGGCTCGGTGCGCTTCGCCGGCCACGTCGAGCGCGAGGGGAAGGCGCTCCACCGCG
AGGCGGCGGACCGGGGCCTCCCCGGCGTGCTCGCCCGGCGGGCCGCGGCGCCCTACCGGTCCGGCCGATCCGCCGACTGG
GTGCTCGTGCCCGCCGCCCGGAGCGCGGCCCCGCGCCCGCCGGCGCCGCGCCCCCGGGGCGACGCGCCGGCCGCGACCGG
CGCCGTCCCGGTGGAACGCACCGTGAACGTGGTCCATCCGGAGAAGGTCTGGTTCCCGGAGGACGGGATCACGAAGGGCG
AGCTCGTCGCGTACCACCGGGCCATCGCACCGTTCATGCTGCCGTACCTGGCCGATCGTCCGCTGGTGCTCACCCGGTTC
CCGGAAGGCATCCACGGTCGCAGCTTCCTGCAGGAGGACGCGCCGGCGTGGCGGCCGCGCTGGTTGCGCGCGGCGACGGT
GCACGCAGGGGAGGGGGGCCGCACCCTCGATCACCTCCTGGTGGACGACGCCGACGGCCTCGCCTGGCTGGTGGATCAGG
GCGCGATCCCGCTCGACGTGCTGGCGGGCCGCGCCGGCGCGCTGGAGCGGCCGGACTGGTGCGTGCTGGAGCTCGACGCG
GGCGACGCGCCGTTCGCGCAGGGGGTGCGGGTGGCGCGCGCGCTCCACGCGCTGTGCGACGCCGCCGGGCTGCCGAGCCA
CGTCAAGACCACCGGCGAGCGGGGGCTGCACGTGCTCGTCCCGCTCGGCGGCCAGCTCACGCACGCGCAGGCCCGCACGC
TCGCCGAGCTGCTGGCGCGGACGGTGGAGGCCGAGCTGCCGGACCTGGCCACCACCGCCCGCACGGCCGCGGCGCGCGGC
GGCCGCGTGCACGTCGACGCGCTGCGGAACGGCCACGGCACCGCCATCGCGGCGCCGTACACGGTGCGCCCGAGGCCGGG
GGCGCCGGTGTCCACGCCGCTGCGCTGGAGCGAGGTGAATGCCCGCCTGGACCCGGCGCGGTTCACCGTGCGCACGGTGC
CTGCGCGCGTGGCCCGGCTCGGACGCGATCCGCTCGGGCCGGTCCTGACCGAGCGCCCGGATCTGCTGCGCGCGCTCGCG
CGCCTGCGGGCGCGGCCGGGTGCGGTCGGGTGCGGTCGGCCGGCGCGCAGCGCGCCGTTCGTGACGCGCCGCACGCCTGG
GGATGCGACCCGCCGCCGCGCGCGCCGCCTCGTGGTGCCGGCGCGCATGTGGGGACAGGTGGCCGAACCCCGCCCGGGGG
GCGACTTTGCGGCAATGTGCCGGCCGACGCGCAATCGTTCGCGCCAATGA

Upstream 100 bases:

>100_bases
GCGGGTGCGGTAACCCCACATACGTCCGCGGAGGTTCGCACGCCGCGGCGGATCTGGGAAGCGCGGGCCCCGGGAGCGTC
CGAGGGCTAGATCAGCTGCG

Downstream 100 bases:

>100_bases
AGGGCGACGGGAGCGTGGACAATCAATGCGGATGGACTATGTTTCGTCCACACCCGAGGGAAACGCCCATGCCGAGACCC
ACCCGCGAGACCTCCATCGA

Product: DNA ligase D, 3'-phosphoesterase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 788

Protein sequence:

>789_residues
MPDRLERYRAMRDPGRTPEPFGGGAPGEDGSGSARAFVVQKHAARRLHWDFRLELGGTLRSWAVPKGPSADPSDRRMAIE
VEDHPVEYADFEGIIPAGNYGAGAVIVWDRGAWWPVGDPEDGLARGKLVFRLRGHKLRGEWTLVRTRAGDGGKRQWLLLK
HRGDPFAGPGRPFPEASVLSGRTVEELAAGTSRAEAAAREAARLGAPARPLPRRGPAPMAPGARRAPFDRAGWLFEVAQG
GQRVSARREGTGAVLRSPQGEDLGPRFPEVALAVALLPGDPVLDGELVVLDDEGRASAEALEARARTGASAAAGAALQRP
ATLFAFDLLALGGRDLRALALADRKRLLAEVAPAVGSVRFAGHVEREGKALHREAADRGLPGVLARRAAAPYRSGRSADW
VLVPAARSAAPRPPAPRPRGDAPAATGAVPVERTVNVVHPEKVWFPEDGITKGELVAYHRAIAPFMLPYLADRPLVLTRF
PEGIHGRSFLQEDAPAWRPRWLRAATVHAGEGGRTLDHLLVDDADGLAWLVDQGAIPLDVLAGRAGALERPDWCVLELDA
GDAPFAQGVRVARALHALCDAAGLPSHVKTTGERGLHVLVPLGGQLTHAQARTLAELLARTVEAELPDLATTARTAAARG
GRVHVDALRNGHGTAIAAPYTVRPRPGAPVSTPLRWSEVNARLDPARFTVRTVPARVARLGRDPLGPVLTERPDLLRALA
RLRARPGAVGCGRPARSAPFVTRRTPGDATRRRARRLVVPARMWGQVAEPRPGGDFAAMCRPTRNRSRQ

Sequences:

>Translated_789_residues
MPDRLERYRAMRDPGRTPEPFGGGAPGEDGSGSARAFVVQKHAARRLHWDFRLELGGTLRSWAVPKGPSADPSDRRMAIE
VEDHPVEYADFEGIIPAGNYGAGAVIVWDRGAWWPVGDPEDGLARGKLVFRLRGHKLRGEWTLVRTRAGDGGKRQWLLLK
HRGDPFAGPGRPFPEASVLSGRTVEELAAGTSRAEAAAREAARLGAPARPLPRRGPAPMAPGARRAPFDRAGWLFEVAQG
GQRVSARREGTGAVLRSPQGEDLGPRFPEVALAVALLPGDPVLDGELVVLDDEGRASAEALEARARTGASAAAGAALQRP
ATLFAFDLLALGGRDLRALALADRKRLLAEVAPAVGSVRFAGHVEREGKALHREAADRGLPGVLARRAAAPYRSGRSADW
VLVPAARSAAPRPPAPRPRGDAPAATGAVPVERTVNVVHPEKVWFPEDGITKGELVAYHRAIAPFMLPYLADRPLVLTRF
PEGIHGRSFLQEDAPAWRPRWLRAATVHAGEGGRTLDHLLVDDADGLAWLVDQGAIPLDVLAGRAGALERPDWCVLELDA
GDAPFAQGVRVARALHALCDAAGLPSHVKTTGERGLHVLVPLGGQLTHAQARTLAELLARTVEAELPDLATTARTAAARG
GRVHVDALRNGHGTAIAAPYTVRPRPGAPVSTPLRWSEVNARLDPARFTVRTVPARVARLGRDPLGPVLTERPDLLRALA
RLRARPGAVGCGRPARSAPFVTRRTPGDATRRRARRLVVPARMWGQVAEPRPGGDFAAMCRPTRNRSRQ
>Mature_788_residues
PDRLERYRAMRDPGRTPEPFGGGAPGEDGSGSARAFVVQKHAARRLHWDFRLELGGTLRSWAVPKGPSADPSDRRMAIEV
EDHPVEYADFEGIIPAGNYGAGAVIVWDRGAWWPVGDPEDGLARGKLVFRLRGHKLRGEWTLVRTRAGDGGKRQWLLLKH
RGDPFAGPGRPFPEASVLSGRTVEELAAGTSRAEAAAREAARLGAPARPLPRRGPAPMAPGARRAPFDRAGWLFEVAQGG
QRVSARREGTGAVLRSPQGEDLGPRFPEVALAVALLPGDPVLDGELVVLDDEGRASAEALEARARTGASAAAGAALQRPA
TLFAFDLLALGGRDLRALALADRKRLLAEVAPAVGSVRFAGHVEREGKALHREAADRGLPGVLARRAAAPYRSGRSADWV
LVPAARSAAPRPPAPRPRGDAPAATGAVPVERTVNVVHPEKVWFPEDGITKGELVAYHRAIAPFMLPYLADRPLVLTRFP
EGIHGRSFLQEDAPAWRPRWLRAATVHAGEGGRTLDHLLVDDADGLAWLVDQGAIPLDVLAGRAGALERPDWCVLELDAG
DAPFAQGVRVARALHALCDAAGLPSHVKTTGERGLHVLVPLGGQLTHAQARTLAELLARTVEAELPDLATTARTAAARGG
RVHVDALRNGHGTAIAAPYTVRPRPGAPVSTPLRWSEVNARLDPARFTVRTVPARVARLGRDPLGPVLTERPDLLRALAR
LRARPGAVGCGRPARSAPFVTRRTPGDATRRRARRLVVPARMWGQVAEPRPGGDFAAMCRPTRNRSRQ

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 84501; Mature: 84370

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRLERYRAMRDPGRTPEPFGGGAPGEDGSGSARAFVVQKHAARRLHWDFRLELGGTLR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCCEEEEEEECCCHH
SWAVPKGPSADPSDRRMAIEVEDHPVEYADFEGIIPAGNYGAGAVIVWDRGAWWPVGDPE
HCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
DGLARGKLVFRLRGHKLRGEWTLVRTRAGDGGKRQWLLLKHRGDPFAGPGRPFPEASVLS
CCHHCCEEEEEEECCEECCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCHHCC
GRTVEELAAGTSRAEAAAREAARLGAPARPLPRRGPAPMAPGARRAPFDRAGWLFEVAQG
CCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
GQRVSARREGTGAVLRSPQGEDLGPRFPEVALAVALLPGDPVLDGELVVLDDEGRASAEA
CCEEHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHH
LEARARTGASAAAGAALQRPATLFAFDLLALGGRDLRALALADRKRLLAEVAPAVGSVRF
HHHHHHCCCCHHHCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
AGHVEREGKALHREAADRGLPGVLARRAAAPYRSGRSADWVLVPAARSAAPRPPAPRPRG
ECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
DAPAATGAVPVERTVNVVHPEKVWFPEDGITKGELVAYHRAIAPFMLPYLADRPLVLTRF
CCCCCCCCCCHHHCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
PEGIHGRSFLQEDAPAWRPRWLRAATVHAGEGGRTLDHLLVDDADGLAWLVDQGAIPLDV
CCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEHHHEEECCCCEEEEECCCCCCHHH
LAGRAGALERPDWCVLELDAGDAPFAQGVRVARALHALCDAAGLPSHVKTTGERGLHVLV
HCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEE
PLGGQLTHAQARTLAELLARTVEAELPDLATTARTAAARGGRVHVDALRNGHGTAIAAPY
ECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEECCE
TVRPRPGAPVSTPLRWSEVNARLDPARFTVRTVPARVARLGRDPLGPVLTERPDLLRALA
EECCCCCCCCCCCCCHHHCCCEECCHHEEEHHHHHHHHHHCCCCCCCHHCCCHHHHHHHH
RLRARPGAVGCGRPARSAPFVTRRTPGDATRRRARRLVVPARMWGQVAEPRPGGDFAAMC
HHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHEECCHHHHCCCCCCCCCCCHHHHC
RPTRNRSRQ
CCCCCCCCC
>Mature Secondary Structure 
PDRLERYRAMRDPGRTPEPFGGGAPGEDGSGSARAFVVQKHAARRLHWDFRLELGGTLR
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCCEEEEEEECCCHH
SWAVPKGPSADPSDRRMAIEVEDHPVEYADFEGIIPAGNYGAGAVIVWDRGAWWPVGDPE
HCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
DGLARGKLVFRLRGHKLRGEWTLVRTRAGDGGKRQWLLLKHRGDPFAGPGRPFPEASVLS
CCHHCCEEEEEEECCEECCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCHHCC
GRTVEELAAGTSRAEAAAREAARLGAPARPLPRRGPAPMAPGARRAPFDRAGWLFEVAQG
CCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
GQRVSARREGTGAVLRSPQGEDLGPRFPEVALAVALLPGDPVLDGELVVLDDEGRASAEA
CCEEHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHH
LEARARTGASAAAGAALQRPATLFAFDLLALGGRDLRALALADRKRLLAEVAPAVGSVRF
HHHHHHCCCCHHHCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
AGHVEREGKALHREAADRGLPGVLARRAAAPYRSGRSADWVLVPAARSAAPRPPAPRPRG
ECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
DAPAATGAVPVERTVNVVHPEKVWFPEDGITKGELVAYHRAIAPFMLPYLADRPLVLTRF
CCCCCCCCCCHHHCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
PEGIHGRSFLQEDAPAWRPRWLRAATVHAGEGGRTLDHLLVDDADGLAWLVDQGAIPLDV
CCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEHHHEEECCCCEEEEECCCCCCHHH
LAGRAGALERPDWCVLELDAGDAPFAQGVRVARALHALCDAAGLPSHVKTTGERGLHVLV
HCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEE
PLGGQLTHAQARTLAELLARTVEAELPDLATTARTAAARGGRVHVDALRNGHGTAIAAPY
ECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEECCE
TVRPRPGAPVSTPLRWSEVNARLDPARFTVRTVPARVARLGRDPLGPVLTERPDLLRALA
EECCCCCCCCCCCCCHHHCCCEECCHHEEEHHHHHHHHHHCCCCCCCHHCCCHHHHHHHH
RLRARPGAVGCGRPARSAPFVTRRTPGDATRRRARRLVVPARMWGQVAEPRPGGDFAAMC
HHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHEECCHHHHCCCCCCCCCCCHHHHC
RPTRNRSRQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]