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The map label for this gene is rrf2 [H]

Identifier: 220916006

GI number: 220916006

Start: 1011425

End: 1011898

Strand: Direct

Name: rrf2 [H]

Synonym: A2cp1_0892

Alternate gene names: 220916006

Gene position: 1011425-1011898 (Clockwise)

Preceding gene: 220916005

Following gene: 220916007

Centisome position: 20.11

GC content: 71.73

Gene sequence:

>474_bases
ATGATCAGGCTGTCGAAGCTCACCGACTACGCGATCGTGATCCTCGCGAACCTGGCGAGGGCGGGGGAGGGCACCCTCAC
CGCCCAGGATCTCGCCGAGCGCTCCAAGGTCCCGCTCCCGACGGTCTCCAAGCTCTGCAAGGAGCTGTCGAAGGCGGGGC
TCGTGCTCTCGCACCGCGGGCGGCACGGCGGCTACGGGCTCGCCCGGCCGGCCGACGCCATCTCCATCGCGGAGATCGTC
GAGGCGCTGGAGGGCCCCATCGCGCTCACCTCGTGCGTGGAGCCCGGCGCGCAGCCCGACGCGTGCGGCCTCGAGGCGAC
CTGCCCGGCCAAGGCGAGCTGGGACCCCGTCTCCCGCGCCATCCAGGGCGCGCTGCGAGGGCTGCCGCTCTCGTCCATCG
TCCTGCAGCACTCCAACGACCCGAAGAACGCCGACACCGTGGACGTCGTCACCCTGGGAGCCCACGTCTCATGA

Upstream 100 bases:

>100_bases
ATGGGTATCTGGACTGTTTCGGTCCATGATGGCTCTCACCGGGTGCGCGCACGTGGCGCGCACGCCGTGAGCGCCCGCTC
CGGCCCGCGGAGGCCGATCG

Downstream 100 bases:

>100_bases
GCACCGCGGAGCAGCTGAAGGAGCTGACCGAGCAGAAGTACCGGTACGGCTTCGTCACCGACATCGAGGAGGACAAGGTC
CCGAAGGGCCTGTCCGAGGA

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MIRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRHGGYGLARPADAISIAEIV
EALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQGALRGLPLSSIVLQHSNDPKNADTVDVVTLGAHVS

Sequences:

>Translated_157_residues
MIRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRHGGYGLARPADAISIAEIV
EALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQGALRGLPLSSIVLQHSNDPKNADTVDVVTLGAHVS
>Mature_157_residues
MIRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRHGGYGLARPADAISIAEIV
EALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQGALRGLPLSSIVLQHSNDPKNADTVDVVTLGAHVS

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16267; Mature: 16267

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRG
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEEECCC
RHGGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRA
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
IQGALRGLPLSSIVLQHSNDPKNADTVDVVTLGAHVS
HHHHHHCCCHHHHHEECCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MIRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRG
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEEECCC
RHGGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRA
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
IQGALRGLPLSSIVLQHSNDPKNADTVDVVTLGAHVS
HHHHHHCCCHHHHHEECCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]