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The map label for this gene is ygcB [H]

Identifier: 220915894

GI number: 220915894

Start: 874941

End: 877604

Strand: Direct

Name: ygcB [H]

Synonym: A2cp1_0778

Alternate gene names: 220915894

Gene position: 874941-877604 (Clockwise)

Preceding gene: 220915893

Following gene: 220915895

Centisome position: 17.4

GC content: 72.86

Gene sequence:

>2664_bases
GTGGACGGAGCGCCGTCCGGTTTCTGGGGAAAGCTGCGACGTCCGCCGGGCGGACCGGTGGAGCGCTGGCATCCGCTCGT
CGCGCACTGCGCCGATGTCGCGGCTTGCCTCGAGGCGCTTCTCGCCGATGACGTCATTCGCTCGAGGCTGGCGCGCCTCG
CCGGCCTTGGCGACCTCACGCCGCCCCAGCGGGCGCGGCTCTGCGTCCTCGGTGCGCTCCACGACGCCGGCAAGTTCAAC
CACGGCTTCCAGCGGAAGGGAGATCCGGCTCCGTCCGACGTGGCGGGGCACGTGGGCGAGCTGTTCGCGCTGCTCGCAGC
GCCCGGTCCGGAGCGCTCCGCGCTCGCCGAGGCGCTCTCGCTTCGCGAGATCGACGGCTGGGGTGCCTCCCGGCTGCTCG
TGGCCGCCCTCGCGCACCACGGCGCCCCGGAGAACGTGCGCAGCCCGAGCCGGCCGCCCCGTGCTGCCCTGTGGCGTCCG
GCCGACGGTCGGGACCCGATCGGTGGCATCGCCTGCCTGGCGGACGCCGCACGATCGTGGTTCCCGGCGTGGCGCGAGCC
GGCCGACCCGTTTCTCGACCGACCGGCGTTCCAGCACGCATTCAGCGGGCTCGTCACTCTCGCCGACTGGGTCGGCTCGG
ACGAAGCGTCCTTCCCGTACGCCTCGACGAAGGACGGCCGCATGTCCTTCGCGCGGGAGCGCGCGCCCGAGGGGCTCCGG
CGCCTGTGGATCGACCCGAGCGCGGCCAGGACGGCGCTGGGAGGGCGTGCGCCGGCCTTCACCCGCCTCTTCGATGTGCC
GAGCCCCCGTCCAGCGCAGCAGGCCGTTCTCGACCTGCCGGTGGCCCCGGAGGGCGGGCTCACCGTGCTGGAGGCCGAGA
CAGGGTCCGGAAAGACGGAAGCAGCCGTGGCGCGCTTCGCCCGTCTCTTCGCCGACGGGCTGGTGAACGGAATGTACTTC
GCGCTCCCGACCCGCACCTCTGCCACGCAGATCCACCGGCGCCTGGTGGACGCGATGCGGCGCTGCTTCCCCGACGAGAA
CTCGCGCCCGCCGGTGGTGCTGGCCGTGCCCGGCTATCTGCGAGTCGACGACGCAGAAGGCAAGCGCGACCCGCGACTGC
CACCGTTCTCGGTCTCGTGGCCCGACGACGAGCAGGAGCGCATGCGCTGGCGCGGATGGGCGGTCGAGCACGGCAAGCGA
TACCTAGCGGGCACCGTGGTCGTCGGCACCATCGACCAGGTCCTCCTCTCCGCGCTCCCGCTGAAGCACGCGCACCTGCG
CGCCGCGTCGCTCCTGCGCCACCTCCTCGTGGTGGACGAGGTGCACGCCTCGGACGCGTACATGAACCGCTTGCTCGCGA
CGGTGCTGGATCGCCACCTCGCCGCCGGCGGGCACGCGCTCCTCATGTCGGCGACGCTGGGCGCCGCCGCGCGCGAGCGG
TTCACCCGGGCGCGCGACGACGCGACCCCACCGCCGCTCTCTACGTGCGCGGAGATGCGCTACCCCGGCATCACCTGTCG
GAGCGCCGGGTCGCGGGTTGCGGATTCCAGGCCTCGGCCCGCGGGCGCAGCAGGCAACCCGAAGCCGATCACCGTCGAGT
CGGTGGCGATCCTCGAGGATCCGTCCGCCGTGGCGCGGCGGGCGCTCGACGCTGCACGCGCGGGCGCCCGGGTGCTGGTG
ATCCGCAACACGGTGAACGGCGCGCTCGCCGTGCAGCGAGCGCTCGAGGTGCTCGCGGCGCCGGCAGACGGCGCACGCCT
CTTCACGTGCGAAGGGCAGGCCGCACCGCACCACTCGAGGTACGCAGGCCCGGATCGCGAGCGGCTGGATCGGGCCATCG
AGTCCGCGCTTGGGAAGGGAACGGACCCGGGCGGCCACGTGGTCGTCGCGACGCAGACCGTCCAGCAGAGCTTGGACCTC
GACGCGGACTTTCTCCTTACGGATCTCTGCCCGGCCGACGTGCTGCTGCAGCGCGCCGGGCGCCTGCATCGGCACGCGGA
TCGCGTTCGTCCGGCCGGGTTCGAGCGCGCGCGCGTCATGCTGCTGGTGCCCAGCACGCCGGACCTCGGCAGGTACATCG
ACGGCCGCGGCGCGGCCCGCGGACCCCACGGCATCGGCACCGTCTACCGCGATCTCCGGATCCTCGAAGCGACTTGGGCG
TTCATCCGCCACCGCCCGGAGATCGACATCCCAGCGATGAACAGGGCCTTCGTCGAGGCGGCCACCCACCCCGAGGCGCT
CGCAGGAGTGGTCGCCCGCGGGGCGGGCCGGTGGGGCCTGCACGCTCGCGCGGTCACCGGCGCGCTCCTCGGAGAGCAGG
TGCTTGCGGCGACAAACGCCTTCGACTGGGACCGACCGTTCGGCGACGCCGGGTTCCCCACCGGCTTCGACGCGGTGGTG
AAGACCCGGCTCGGCGCTGGCGATCGGATCGCCAGGTTCGAGCCGGCGGTCCCGTCGCCCTTCGCCGGGAGCGTCGAATT
CTTGAGCATCCCCGCATGGTTTGCGCAGGGTGCGGGATCGGAAGAGGTGCCGCGAAGCGTGAACGTGTCTGGCCGCTTCG
TACGGTTCCAGTTCGGAGCACGACGCTTCGTCTACGACCGGCTCGGCCTTCGTCCTGAGGACGCCAGCGGACCACCGCAC
GAGGAGGATGCTGCAGATGCCTAG

Upstream 100 bases:

>100_bases
GCGGCGCCAGTTGTCGCGGGGCGGAGCTGACCCGGGCGCGGTTCTCACTTCCCGTCACATCGGGGAAACCGCACGTTCCA
CGCTCACCGGGAGGTGAGGC

Downstream 100 bases:

>100_bases
TCGGAAGAGCGCGGGGACCGTCAAAGCGGGGAAGCGAGCTTCGCTGAAGAAGGCGCCGGTCGAGCGGAAGCCGCCGGCGA
CGCCTGCGCACGACCTGCTC

Product: CRISPR-associated helicase Cas3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 887; Mature: 887

Protein sequence:

>887_residues
MDGAPSGFWGKLRRPPGGPVERWHPLVAHCADVAACLEALLADDVIRSRLARLAGLGDLTPPQRARLCVLGALHDAGKFN
HGFQRKGDPAPSDVAGHVGELFALLAAPGPERSALAEALSLREIDGWGASRLLVAALAHHGAPENVRSPSRPPRAALWRP
ADGRDPIGGIACLADAARSWFPAWREPADPFLDRPAFQHAFSGLVTLADWVGSDEASFPYASTKDGRMSFARERAPEGLR
RLWIDPSAARTALGGRAPAFTRLFDVPSPRPAQQAVLDLPVAPEGGLTVLEAETGSGKTEAAVARFARLFADGLVNGMYF
ALPTRTSATQIHRRLVDAMRRCFPDENSRPPVVLAVPGYLRVDDAEGKRDPRLPPFSVSWPDDEQERMRWRGWAVEHGKR
YLAGTVVVGTIDQVLLSALPLKHAHLRAASLLRHLLVVDEVHASDAYMNRLLATVLDRHLAAGGHALLMSATLGAAARER
FTRARDDATPPPLSTCAEMRYPGITCRSAGSRVADSRPRPAGAAGNPKPITVESVAILEDPSAVARRALDAARAGARVLV
IRNTVNGALAVQRALEVLAAPADGARLFTCEGQAAPHHSRYAGPDRERLDRAIESALGKGTDPGGHVVVATQTVQQSLDL
DADFLLTDLCPADVLLQRAGRLHRHADRVRPAGFERARVMLLVPSTPDLGRYIDGRGAARGPHGIGTVYRDLRILEATWA
FIRHRPEIDIPAMNRAFVEAATHPEALAGVVARGAGRWGLHARAVTGALLGEQVLAATNAFDWDRPFGDAGFPTGFDAVV
KTRLGAGDRIARFEPAVPSPFAGSVEFLSIPAWFAQGAGSEEVPRSVNVSGRFVRFQFGARRFVYDRLGLRPEDASGPPH
EEDAADA

Sequences:

>Translated_887_residues
MDGAPSGFWGKLRRPPGGPVERWHPLVAHCADVAACLEALLADDVIRSRLARLAGLGDLTPPQRARLCVLGALHDAGKFN
HGFQRKGDPAPSDVAGHVGELFALLAAPGPERSALAEALSLREIDGWGASRLLVAALAHHGAPENVRSPSRPPRAALWRP
ADGRDPIGGIACLADAARSWFPAWREPADPFLDRPAFQHAFSGLVTLADWVGSDEASFPYASTKDGRMSFARERAPEGLR
RLWIDPSAARTALGGRAPAFTRLFDVPSPRPAQQAVLDLPVAPEGGLTVLEAETGSGKTEAAVARFARLFADGLVNGMYF
ALPTRTSATQIHRRLVDAMRRCFPDENSRPPVVLAVPGYLRVDDAEGKRDPRLPPFSVSWPDDEQERMRWRGWAVEHGKR
YLAGTVVVGTIDQVLLSALPLKHAHLRAASLLRHLLVVDEVHASDAYMNRLLATVLDRHLAAGGHALLMSATLGAAARER
FTRARDDATPPPLSTCAEMRYPGITCRSAGSRVADSRPRPAGAAGNPKPITVESVAILEDPSAVARRALDAARAGARVLV
IRNTVNGALAVQRALEVLAAPADGARLFTCEGQAAPHHSRYAGPDRERLDRAIESALGKGTDPGGHVVVATQTVQQSLDL
DADFLLTDLCPADVLLQRAGRLHRHADRVRPAGFERARVMLLVPSTPDLGRYIDGRGAARGPHGIGTVYRDLRILEATWA
FIRHRPEIDIPAMNRAFVEAATHPEALAGVVARGAGRWGLHARAVTGALLGEQVLAATNAFDWDRPFGDAGFPTGFDAVV
KTRLGAGDRIARFEPAVPSPFAGSVEFLSIPAWFAQGAGSEEVPRSVNVSGRFVRFQFGARRFVYDRLGLRPEDASGPPH
EEDAADA
>Mature_887_residues
MDGAPSGFWGKLRRPPGGPVERWHPLVAHCADVAACLEALLADDVIRSRLARLAGLGDLTPPQRARLCVLGALHDAGKFN
HGFQRKGDPAPSDVAGHVGELFALLAAPGPERSALAEALSLREIDGWGASRLLVAALAHHGAPENVRSPSRPPRAALWRP
ADGRDPIGGIACLADAARSWFPAWREPADPFLDRPAFQHAFSGLVTLADWVGSDEASFPYASTKDGRMSFARERAPEGLR
RLWIDPSAARTALGGRAPAFTRLFDVPSPRPAQQAVLDLPVAPEGGLTVLEAETGSGKTEAAVARFARLFADGLVNGMYF
ALPTRTSATQIHRRLVDAMRRCFPDENSRPPVVLAVPGYLRVDDAEGKRDPRLPPFSVSWPDDEQERMRWRGWAVEHGKR
YLAGTVVVGTIDQVLLSALPLKHAHLRAASLLRHLLVVDEVHASDAYMNRLLATVLDRHLAAGGHALLMSATLGAAARER
FTRARDDATPPPLSTCAEMRYPGITCRSAGSRVADSRPRPAGAAGNPKPITVESVAILEDPSAVARRALDAARAGARVLV
IRNTVNGALAVQRALEVLAAPADGARLFTCEGQAAPHHSRYAGPDRERLDRAIESALGKGTDPGGHVVVATQTVQQSLDL
DADFLLTDLCPADVLLQRAGRLHRHADRVRPAGFERARVMLLVPSTPDLGRYIDGRGAARGPHGIGTVYRDLRILEATWA
FIRHRPEIDIPAMNRAFVEAATHPEALAGVVARGAGRWGLHARAVTGALLGEQVLAATNAFDWDRPFGDAGFPTGFDAVV
KTRLGAGDRIARFEPAVPSPFAGSVEFLSIPAWFAQGAGSEEVPRSVNVSGRFVRFQFGARRFVYDRLGLRPEDASGPPH
EEDAADA

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=787, Percent_Identity=28.843710292249, Blast_Score=224, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 95233; Mature: 95233

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGAPSGFWGKLRRPPGGPVERWHPLVAHCADVAACLEALLADDVIRSRLARLAGLGDLT
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPQRARLCVLGALHDAGKFNHGFQRKGDPAPSDVAGHVGELFALLAAPGPERSALAEALS
CCHHHHEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LREIDGWGASRLLVAALAHHGAPENVRSPSRPPRAALWRPADGRDPIGGIACLADAARSW
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
FPAWREPADPFLDRPAFQHAFSGLVTLADWVGSDEASFPYASTKDGRMSFARERAPEGLR
CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHH
RLWIDPSAARTALGGRAPAFTRLFDVPSPRPAQQAVLDLPVAPEGGLTVLEAETGSGKTE
HHCCCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHEECCCCCCCCEEEEEECCCCCCHH
AAVARFARLFADGLVNGMYFALPTRTSATQIHRRLVDAMRRCFPDENSRPPVVLAVPGYL
HHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEE
RVDDAEGKRDPRLPPFSVSWPDDEQERMRWRGWAVEHGKRYLAGTVVVGTIDQVLLSALP
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCC
LKHAHLRAASLLRHLLVVDEVHASDAYMNRLLATVLDRHLAAGGHALLMSATLGAAARER
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FTRARDDATPPPLSTCAEMRYPGITCRSAGSRVADSRPRPAGAAGNPKPITVESVAILED
HHHHCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
PSAVARRALDAARAGARVLVIRNTVNGALAVQRALEVLAAPADGARLFTCEGQAAPHHSR
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
YAGPDRERLDRAIESALGKGTDPGGHVVVATQTVQQSLDLDADFLLTDLCPADVLLQRAG
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
RLHRHADRVRPAGFERARVMLLVPSTPDLGRYIDGRGAARGPHGIGTVYRDLRILEATWA
HHHHHHHHCCCCCCCCCEEEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FIRHRPEIDIPAMNRAFVEAATHPEALAGVVARGAGRWGLHARAVTGALLGEQVLAATNA
HHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
FDWDRPFGDAGFPTGFDAVVKTRLGAGDRIARFEPAVPSPFAGSVEFLSIPAWFAQGAGS
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCC
EEVPRSVNVSGRFVRFQFGARRFVYDRLGLRPEDASGPPHEEDAADA
CCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDGAPSGFWGKLRRPPGGPVERWHPLVAHCADVAACLEALLADDVIRSRLARLAGLGDLT
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPQRARLCVLGALHDAGKFNHGFQRKGDPAPSDVAGHVGELFALLAAPGPERSALAEALS
CCHHHHEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LREIDGWGASRLLVAALAHHGAPENVRSPSRPPRAALWRPADGRDPIGGIACLADAARSW
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
FPAWREPADPFLDRPAFQHAFSGLVTLADWVGSDEASFPYASTKDGRMSFARERAPEGLR
CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHH
RLWIDPSAARTALGGRAPAFTRLFDVPSPRPAQQAVLDLPVAPEGGLTVLEAETGSGKTE
HHCCCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHEECCCCCCCCEEEEEECCCCCCHH
AAVARFARLFADGLVNGMYFALPTRTSATQIHRRLVDAMRRCFPDENSRPPVVLAVPGYL
HHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEE
RVDDAEGKRDPRLPPFSVSWPDDEQERMRWRGWAVEHGKRYLAGTVVVGTIDQVLLSALP
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCC
LKHAHLRAASLLRHLLVVDEVHASDAYMNRLLATVLDRHLAAGGHALLMSATLGAAARER
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FTRARDDATPPPLSTCAEMRYPGITCRSAGSRVADSRPRPAGAAGNPKPITVESVAILED
HHHHCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
PSAVARRALDAARAGARVLVIRNTVNGALAVQRALEVLAAPADGARLFTCEGQAAPHHSR
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
YAGPDRERLDRAIESALGKGTDPGGHVVVATQTVQQSLDLDADFLLTDLCPADVLLQRAG
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
RLHRHADRVRPAGFERARVMLLVPSTPDLGRYIDGRGAARGPHGIGTVYRDLRILEATWA
HHHHHHHHCCCCCCCCCEEEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FIRHRPEIDIPAMNRAFVEAATHPEALAGVVARGAGRWGLHARAVTGALLGEQVLAATNA
HHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
FDWDRPFGDAGFPTGFDAVVKTRLGAGDRIARFEPAVPSPFAGSVEFLSIPAWFAQGAGS
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCC
EEVPRSVNVSGRFVRFQFGARRFVYDRLGLRPEDASGPPHEEDAADA
CCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]