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The map label for this gene is lig [H]

Identifier: 220915193

GI number: 220915193

Start: 80529

End: 81521

Strand: Direct

Name: lig [H]

Synonym: A2cp1_0072

Alternate gene names: 220915193

Gene position: 80529-81521 (Clockwise)

Preceding gene: 220915192

Following gene: 220915194

Centisome position: 1.6

GC content: 74.02

Gene sequence:

>993_bases
ATGAGGCGCCCGCCGATCGAGCTCCACCGGGGCGAGCTGAAGGTCACCGGCTCGTCCCTCCACCTCGACGCCACCCGGCG
GGTCGAGTGCGCGTTCGTGTCGCACGCGCACGGCGATCACATCGGGCGCCACGATCGGACCATCGCCACCGCGGCCACGC
TGGCGCTCATGCGCCACCGGCTGGGCGAGGGGAAGCGCCGCAAGACCGAGCACCTGCCCGCCTCGTACCGGTCGCCGTTC
GGCCTGGGCGAGCTGACGCTGGAGCTGTTCCCGGCCGGCCACGTGCTCGGCTCGGCCCAGGTGCGGGTGACGCGCAACGG
CGTCTCGCTCGGCTACTCGGGCGACCTCTGCACCGAGCCCACCCACGCCGCCGAGCGCGCCGAGGTGATGGGCTGCGACG
TGCTCGTGATCGAGTCCACCTTCGGCCACCCGCGCTACGTCTTCCCGCCGAAGGACGAGACGCTCGCGGCGGTCCGCCGC
TTCGTGGACGGCGCGCTCGCCGACGGCGTCACGCCGGTGCTGCTCGGCTACGCGCTCGGCAAGGCACAGGAGATCCTGAA
GTACCTCTCCGACCTCGGCTACGCCTGCCGCGCCCACCCGGTGGTCCACGCGGTGAACAAGGTCTACGAGGCGCACGGGG
TGGCGCTGCCCAACGTGCGGCCGCTCGGGCCGGAGGGCGCCGGGATGGACGAGGTGGTGGTGTGTCCCCCGCACCTCGCC
CGCAGCCCGGCCATGCGCGGCCTCCGCAAGCGCCGCACCGCCATCCTCACCGGCTGGGCCATCGACGGCGGCCGCTTCTT
CCGCGGCGTGGACGCGGCGTTCCCGCTGTCCGACCACGCCGACTTCCCCTCGCTGGTGCGCTACGCCCGGGCCACCGGCG
CCGGCCGGGTGTTCACGGTCCACGGCCACGAGGACGCGCTCGCCGCCGCGCTCCGCAAGGAGGGGATCCGCGCCGAGCCC
CTGCGCGAGCACATGCAGCTCGAGCTGATTTGA

Upstream 100 bases:

>100_bases
AGAAGAAGGCGCCGGCGAAGGAGCCGCCGAAGAAGTAGCGGCGGGGTCCGCGGGCCTGCCGCGCGCCTTTGTCGGGCGCC
CGTTGTAGAACGGGCGCCCG

Downstream 100 bases:

>100_bases
GGTGTCGCGGGCCCGGGTGAGGTAGATCTCCCCCGTGATCCAGCTCACCGTCACGGCGGACGCGGCCGGCCAGCGGCTCG
ACAAGCTCGTGCGCAAGGCG

Product: mRNA 3'-end processing factor

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [ATP] [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MRRPPIELHRGELKVTGSSLHLDATRRVECAFVSHAHGDHIGRHDRTIATAATLALMRHRLGEGKRRKTEHLPASYRSPF
GLGELTLELFPAGHVLGSAQVRVTRNGVSLGYSGDLCTEPTHAAERAEVMGCDVLVIESTFGHPRYVFPPKDETLAAVRR
FVDGALADGVTPVLLGYALGKAQEILKYLSDLGYACRAHPVVHAVNKVYEAHGVALPNVRPLGPEGAGMDEVVVCPPHLA
RSPAMRGLRKRRTAILTGWAIDGGRFFRGVDAAFPLSDHADFPSLVRYARATGAGRVFTVHGHEDALAAALRKEGIRAEP
LREHMQLELI

Sequences:

>Translated_330_residues
MRRPPIELHRGELKVTGSSLHLDATRRVECAFVSHAHGDHIGRHDRTIATAATLALMRHRLGEGKRRKTEHLPASYRSPF
GLGELTLELFPAGHVLGSAQVRVTRNGVSLGYSGDLCTEPTHAAERAEVMGCDVLVIESTFGHPRYVFPPKDETLAAVRR
FVDGALADGVTPVLLGYALGKAQEILKYLSDLGYACRAHPVVHAVNKVYEAHGVALPNVRPLGPEGAGMDEVVVCPPHLA
RSPAMRGLRKRRTAILTGWAIDGGRFFRGVDAAFPLSDHADFPSLVRYARATGAGRVFTVHGHEDALAAALRKEGIRAEP
LREHMQLELI
>Mature_330_residues
MRRPPIELHRGELKVTGSSLHLDATRRVECAFVSHAHGDHIGRHDRTIATAATLALMRHRLGEGKRRKTEHLPASYRSPF
GLGELTLELFPAGHVLGSAQVRVTRNGVSLGYSGDLCTEPTHAAERAEVMGCDVLVIESTFGHPRYVFPPKDETLAAVRR
FVDGALADGVTPVLLGYALGKAQEILKYLSDLGYACRAHPVVHAVNKVYEAHGVALPNVRPLGPEGAGMDEVVVCPPHLA
RSPAMRGLRKRRTAILTGWAIDGGRFFRGVDAAFPLSDHADFPSLVRYARATGAGRVFTVHGHEDALAAALRKEGIRAEP
LREHMQLELI

Specific function: DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair [H]

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ATP- dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000977
- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR016059
- InterPro:   IPR012308
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011108 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF04675 DNA_ligase_A_N; PF07521 RMMBL [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 35897; Mature: 35897

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPPIELHRGELKVTGSSLHLDATRRVECAFVSHAHGDHIGRHDRTIATAATLALMRHR
CCCCCCCEECCEEEEECCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
LGEGKRRKTEHLPASYRSPFGLGELTLELFPAGHVLGSAQVRVTRNGVSLGYSGDLCTEP
HCCCCHHHHHCCCCHHCCCCCCCCEEEEEECCCCEECCEEEEEEECCEEECCCCCCCCCC
THAAERAEVMGCDVLVIESTFGHPRYVFPPKDETLAAVRRFVDGALADGVTPVLLGYALG
CHHHHHHHHCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KAQEILKYLSDLGYACRAHPVVHAVNKVYEAHGVALPNVRPLGPEGAGMDEVVVCPPHLA
HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCHHH
RSPAMRGLRKRRTAILTGWAIDGGRFFRGVDAAFPLSDHADFPSLVRYARATGAGRVFTV
CCHHHHHHHHHHHEEEEEEEECCCHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
HGHEDALAAALRKEGIRAEPLREHMQLELI
ECCHHHHHHHHHHCCCCCCHHHHHHEEECC
>Mature Secondary Structure
MRRPPIELHRGELKVTGSSLHLDATRRVECAFVSHAHGDHIGRHDRTIATAATLALMRHR
CCCCCCCEECCEEEEECCEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
LGEGKRRKTEHLPASYRSPFGLGELTLELFPAGHVLGSAQVRVTRNGVSLGYSGDLCTEP
HCCCCHHHHHCCCCHHCCCCCCCCEEEEEECCCCEECCEEEEEEECCEEECCCCCCCCCC
THAAERAEVMGCDVLVIESTFGHPRYVFPPKDETLAAVRRFVDGALADGVTPVLLGYALG
CHHHHHHHHCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KAQEILKYLSDLGYACRAHPVVHAVNKVYEAHGVALPNVRPLGPEGAGMDEVVVCPPHLA
HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCHHH
RSPAMRGLRKRRTAILTGWAIDGGRFFRGVDAAFPLSDHADFPSLVRYARATGAGRVFTV
CCHHHHHHHHHHHEEEEEEEECCCHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
HGHEDALAAALRKEGIRAEPLREHMQLELI
ECCHHHHHHHHHHCCCCCCHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA