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The map label for this gene is ydfH [H]

Identifier: 220914905

GI number: 220914905

Start: 279974

End: 280726

Strand: Reverse

Name: ydfH [H]

Synonym: Mnod_8055

Alternate gene names: 220914905

Gene position: 280726-279974 (Counterclockwise)

Preceding gene: 220914912

Following gene: 220914897

Centisome position: 61.28

GC content: 60.03

Gene sequence:

>753_bases
ATGAATTACATCGCCGGCAAGCCGCCCGCAGTGCGCCCTGCAAGGCGTAGCAAGAAGCCCAATCACAAGGGAGCTTCCGC
CGCCCCGCTTGACCCTGTCGAGCAAGGCGAGATCCAGGATCTGTCTCTGGCGGAGCAAGCCTACCATCAACTCGAGGAGT
TGATCACAACTCTCGCCCTGCCACCCGGAACGGTTCTTGCAGAGCAGGGCCTTGCCCAACGCCTTCAGATTGGCCGGACG
CCGATCCGTGAGGCCCTGCAGCGTCTGGCACGTGACGGCTTGGTCGTGGTGATTCCTCGACGCGGCATTCTCGTCTCGGA
GATCAACCTGCGTACGCAGCTCCGCCTGTTGGAAACGCGACGGGTGCTGGAGCATCTGATTGCTCGACTTGCCGCCGAAC
GTGCCACCGCTGAGGAGCGTCGCGCCTTCGCGGAGATTGCCGCGAACATGCGCGCGGCCGCAGATGCCGCCGATGACATC
GCTTTTATGCGTCTGGACCGGCAGTTCAACGAGCTTGCTGCCGCTGCATCACGGAATGAATTTGCTGTACGCTCCCTGAA
CTCGATGGCTGCTCTGTCAAGACGTTTCTGGTATCAGCATTACAAAGAAGCGGCGGATCTGCCGCTTGCGGCGAATCTTC
ATGCAGAGGTGTGCGAAGCCATTGCCAAACGCGACGTCAAGGCCGCGGGAGAAGCGTCCGACCGTCTGATGGATTATATC
GACAGCTTTGCTCGAAAAACCCTGGATACATGA

Upstream 100 bases:

>100_bases
TATATCACGCGGGTTTCAGGCCGGCCGCAGGTGTGCAGCAGCCGTGCGCCCCCCATATCTGCGTGGTATGAAGAGGCCTG
ACGAAGCTGATGGACCGCTG

Downstream 100 bases:

>100_bases
CGAATGGCGCAGGGCATTGTCTGCTTAACTGACCAAAATTCACGCAATGAAGTGAATTCACTCCGAATGATCATGCCCGA
AAACCCCAGTCGATTACATT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNYIAGKPPAVRPARRSKKPNHKGASAAPLDPVEQGEIQDLSLAEQAYHQLEELITTLALPPGTVLAEQGLAQRLQIGRT
PIREALQRLARDGLVVVIPRRGILVSEINLRTQLRLLETRRVLEHLIARLAAERATAEERRAFAEIAANMRAAADAADDI
AFMRLDRQFNELAAAASRNEFAVRSLNSMAALSRRFWYQHYKEAADLPLAANLHAEVCEAIAKRDVKAAGEASDRLMDYI
DSFARKTLDT

Sequences:

>Translated_250_residues
MNYIAGKPPAVRPARRSKKPNHKGASAAPLDPVEQGEIQDLSLAEQAYHQLEELITTLALPPGTVLAEQGLAQRLQIGRT
PIREALQRLARDGLVVVIPRRGILVSEINLRTQLRLLETRRVLEHLIARLAAERATAEERRAFAEIAANMRAAADAADDI
AFMRLDRQFNELAAAASRNEFAVRSLNSMAALSRRFWYQHYKEAADLPLAANLHAEVCEAIAKRDVKAAGEASDRLMDYI
DSFARKTLDT
>Mature_250_residues
MNYIAGKPPAVRPARRSKKPNHKGASAAPLDPVEQGEIQDLSLAEQAYHQLEELITTLALPPGTVLAEQGLAQRLQIGRT
PIREALQRLARDGLVVVIPRRGILVSEINLRTQLRLLETRRVLEHLIARLAAERATAEERRAFAEIAANMRAAADAADDI
AFMRLDRQFNELAAAASRNEFAVRSLNSMAALSRRFWYQHYKEAADLPLAANLHAEVCEAIAKRDVKAAGEASDRLMDYI
DSFARKTLDT

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27736; Mature: 27736

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYIAGKPPAVRPARRSKKPNHKGASAAPLDPVEQGEIQDLSLAEQAYHQLEELITTLAL
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PPGTVLAEQGLAQRLQIGRTPIREALQRLARDGLVVVIPRRGILVSEINLRTQLRLLETR
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHHHHHHHHH
RVLEHLIARLAAERATAEERRAFAEIAANMRAAADAADDIAFMRLDRQFNELAAAASRNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
FAVRSLNSMAALSRRFWYQHYKEAADLPLAANLHAEVCEAIAKRDVKAAGEASDRLMDYI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
DSFARKTLDT
HHHHHHHCCC
>Mature Secondary Structure
MNYIAGKPPAVRPARRSKKPNHKGASAAPLDPVEQGEIQDLSLAEQAYHQLEELITTLAL
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PPGTVLAEQGLAQRLQIGRTPIREALQRLARDGLVVVIPRRGILVSEINLRTQLRLLETR
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHHHHHHHHH
RVLEHLIARLAAERATAEERRAFAEIAANMRAAADAADDIAFMRLDRQFNELAAAASRNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
FAVRSLNSMAALSRRFWYQHYKEAADLPLAANLHAEVCEAIAKRDVKAAGEASDRLMDYI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
DSFARKTLDT
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]