| Definition | Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence. |
|---|---|
| Accession | NC_011887 |
| Length | 458,070 |
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The map label for this gene is ykvO [H]
Identifier: 220914736
GI number: 220914736
Start: 80494
End: 81264
Strand: Reverse
Name: ykvO [H]
Synonym: Mnod_7850
Alternate gene names: 220914736
Gene position: 81264-80494 (Counterclockwise)
Preceding gene: 220914738
Following gene: 220914734
Centisome position: 17.74
GC content: 66.15
Gene sequence:
>771_bases ATGGAACGGTTTACAGGCAAAGCCGTAGCGATCACCGGAGGCGGTTCCGGCATCGGCAAGGCGACGGCAGCACGCTTTGT GGCCGAAGGCGCCCGGGTCGTCATTAACGGGCGCGACGTGGCCAAGCTTGAAGCCACCGCCCGCGAAATCGACCCGAGCG GCCGGAACGTGGTTGTCTCAGCCGGCGATATCGCTGACCCGGCCACCGGCGCGGCGCTGGTCGAGGCCGCCGTGTCCCGG TTCGGCCAGCTCGACGTTCTGGTCAACAACGCTGGCGTGTTCAACCCGAAGCCGTTCCTCGAGCTGACCGAGGCAGATTA CGACTGGTATCTCGATACGATCCTGAAGGGGAAATTCTTCACCGCGCAGGCTGCGGCCAAGGCGATGAAGGACCGGGGCG GGGCCATTGTCCAGACGGGTTCGATGTGGGCAATCCAGGCGATCGGGGCGACCCCGTCGGCCGCCTACTCCGCCGCCAAT GCGGGGGTCCACGCGATGGTGCGCAATCTCGCGATCGAACTCGCTCCCTTTAAGATCCGCATCAATGCCGTGGCCCCGGC CGTCATTGAGACGCCAGTCTACAGCACCTTCATGTCGGCGCAGCAGGTCAGGGACGTGCTCCCGACCTTCAACGCGTTCC ACCCGCTTGGTCGCAACGGCCAGCCCGGCGACGTGGCTGAGGCCATCCTGTTCCTTGCGTCCGACCAGGCCGCTTGGATC ACCGGCACCGTGCTGCCCGTCGATGGCGGCGTGACGGCCGGTCGGCAGTAG
Upstream 100 bases:
>100_bases AACATCGATCCTGTCTACCAACCGATAGATAGGCCTTGCCGGGCCGATGCACATGGGTTAGGTCTGAGCCACCTACCTAC CGATAGATAAGGCCACATGG
Downstream 100 bases:
>100_bases CCGGATCTCCACCCGAACGACGCGCTTCGGAATGAACCCAGCCGTCAGCGAGATAGGGGTTCCCATGTCGCTGACGGCAC GGGTTGAGGGATCGAGCTGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MERFTGKAVAITGGGSGIGKATAARFVAEGARVVINGRDVAKLEATAREIDPSGRNVVVSAGDIADPATGAALVEAAVSR FGQLDVLVNNAGVFNPKPFLELTEADYDWYLDTILKGKFFTAQAAAKAMKDRGGAIVQTGSMWAIQAIGATPSAAYSAAN AGVHAMVRNLAIELAPFKIRINAVAPAVIETPVYSTFMSAQQVRDVLPTFNAFHPLGRNGQPGDVAEAILFLASDQAAWI TGTVLPVDGGVTAGRQ
Sequences:
>Translated_256_residues MERFTGKAVAITGGGSGIGKATAARFVAEGARVVINGRDVAKLEATAREIDPSGRNVVVSAGDIADPATGAALVEAAVSR FGQLDVLVNNAGVFNPKPFLELTEADYDWYLDTILKGKFFTAQAAAKAMKDRGGAIVQTGSMWAIQAIGATPSAAYSAAN AGVHAMVRNLAIELAPFKIRINAVAPAVIETPVYSTFMSAQQVRDVLPTFNAFHPLGRNGQPGDVAEAILFLASDQAAWI TGTVLPVDGGVTAGRQ >Mature_256_residues MERFTGKAVAITGGGSGIGKATAARFVAEGARVVINGRDVAKLEATAREIDPSGRNVVVSAGDIADPATGAALVEAAVSR FGQLDVLVNNAGVFNPKPFLELTEADYDWYLDTILKGKFFTAQAAAKAMKDRGGAIVQTGSMWAIQAIGATPSAAYSAAN AGVHAMVRNLAIELAPFKIRINAVAPAVIETPVYSTFMSAQQVRDVLPTFNAFHPLGRNGQPGDVAEAILFLASDQAAWI TGTVLPVDGGVTAGRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=36.2204724409449, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.9365079365079, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=31.7073170731707, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=32.421875, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=31.1023622047244, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=32.1138211382114, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=32.034632034632, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=28.6290322580645, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI4504505, Length=194, Percent_Identity=32.9896907216495, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=31.2741312741313, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=26.2745098039216, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=25.4980079681275, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503301, Length=229, Percent_Identity=30.5676855895196, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=25.7936507936508, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=29.9465240641711, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=31.0160427807487, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI31542939, Length=228, Percent_Identity=24.1228070175439, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI186928839, Length=90, Percent_Identity=44.4444444444444, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4503817, Length=193, Percent_Identity=27.4611398963731, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=32.295719844358, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=33.4677419354839, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=33.8461538461538, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=31.1284046692607, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=28.4584980237154, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI2367365, Length=257, Percent_Identity=32.295719844358, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=30.3643724696356, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1789057, Length=251, Percent_Identity=26.2948207171315, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=24.6753246753247, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788891, Length=262, Percent_Identity=26.3358778625954, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=31.5985130111524, Blast_Score=132, Evalue=1e-31, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=31.4176245210728, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=33.8403041825095, Blast_Score=123, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17562906, Length=278, Percent_Identity=32.0143884892086, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17563726, Length=273, Percent_Identity=31.1355311355311, Blast_Score=118, Evalue=4e-27, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=32.2834645669291, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=32.4110671936759, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=32.9588014981273, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=34.5238095238095, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=32.319391634981, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=32.4626865671642, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=30.8550185873606, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32.8, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=30.2583025830258, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=33.0677290836653, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=32.8125, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=30.4832713754647, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=29.3893129770992, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=32.258064516129, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.0751879699248, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=29.9242424242424, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=31.203007518797, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=31.3868613138686, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=29.277566539924, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=30.4, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=28.6821705426357, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561272, Length=235, Percent_Identity=32.3404255319149, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=29.8969072164948, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=28.6458333333333, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=27.0833333333333, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17507613, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI32563809, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.968253968254, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6322861, Length=242, Percent_Identity=28.5123966942149, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=30.8080808080808, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=36.5461847389558, Blast_Score=138, Evalue=4e-33, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=33.0645161290323, Blast_Score=134, Evalue=4e-32, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=33.7301587301587, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=32.183908045977, Blast_Score=119, Evalue=1e-27, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=35.0597609561753, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=31.8725099601594, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=29.9610894941634, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI18859837, Length=223, Percent_Identity=30.0448430493274, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=29.5275590551181, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=27.0935960591133, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI116007236, Length=248, Percent_Identity=23.7903225806452, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI116007234, Length=243, Percent_Identity=27.1604938271605, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24584752, Length=203, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=26.5625, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI116007238, Length=211, Percent_Identity=23.2227488151659, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26542; Mature: 26542
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERFTGKAVAITGGGSGIGKATAARFVAEGARVVINGRDVAKLEATAREIDPSGRNVVVS CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCEEEEE AGDIADPATGAALVEAAVSRFGQLDVLVNNAGVFNPKPFLELTEADYDWYLDTILKGKFF CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHCCCCC TAQAAAKAMKDRGGAIVQTGSMWAIQAIGATPSAAYSAANAGVHAMVRNLAIELAPFKIR HHHHHHHHHHHCCCEEEEECCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHEEECCEEEE INAVAPAVIETPVYSTFMSAQQVRDVLPTFNAFHPLGRNGQPGDVAEAILFLASDQAAWI EEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE TGTVLPVDGGVTAGRQ EEEEEEECCCCCCCCC >Mature Secondary Structure MERFTGKAVAITGGGSGIGKATAARFVAEGARVVINGRDVAKLEATAREIDPSGRNVVVS CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCEEEEE AGDIADPATGAALVEAAVSRFGQLDVLVNNAGVFNPKPFLELTEADYDWYLDTILKGKFF CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHCCCCC TAQAAAKAMKDRGGAIVQTGSMWAIQAIGATPSAAYSAANAGVHAMVRNLAIELAPFKIR HHHHHHHHHHHCCCEEEEECCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHEEECCEEEE INAVAPAVIETPVYSTFMSAQQVRDVLPTFNAFHPLGRNGQPGDVAEAILFLASDQAAWI EEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE TGTVLPVDGGVTAGRQ EEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]