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The map label for this gene is rbsC [H]

Identifier: 220914700

GI number: 220914700

Start: 38742

End: 39776

Strand: Reverse

Name: rbsC [H]

Synonym: Mnod_7808

Alternate gene names: 220914700

Gene position: 39776-38742 (Counterclockwise)

Preceding gene: 220914701

Following gene: 220914699

Centisome position: 8.68

GC content: 62.51

Gene sequence:

>1035_bases
ATGTTCGTCAATAACTCATCTGCGGAGGGCGTGGCCGTCGCAGCTCCGGTTGCGACCAGGCGCCGTCTGCCGGTTGAGGC
AAACATTCTCCTGATCCTCATCGGCATCGCACTGGTCTTCGAGCTTCTCGGCTGGGTTGTCGTCGGCCAGAGCTTCCTGA
TGAATCCGCAGCGTTTGACGATCCTGATCCTGCAGGTCTCGGTAATCGGCATCATCGCGATCGGCGTCACCCAGGTCATC
ATCACCGGTGGCATCGACCTGTCGTCCGGTTCGGTGGTGGGGCTGAGCGCCATGGTCGCGGCAAGCGACGCGCAATCCTC
GGCTTGGACCAAGGTGCTCTATCCGTCGATGACCGATCTTCCGGTGGCCGTGCCGATTCTGGTCGGCCTGGCGATCGGCC
TTCTCGCCGGCGTCATCAACGGCATGCTGATCGTCTATACCAAGATTCCACCTTTCATCGCCACCCTCGGCATGATGGTA
TCGGCCCGCGGCCTCTCCAAGTGGTACACCAAAGGGCAGCCGGTCTCGGGGCTGACGGACGAATTCAGCGTCATTGGATC
GGGCATCTGGCCAGTCGTCATCTTCCTGTCGGTCGCGGTCATCTTTCACGTCCTGCTGCGTTACACGCGCTACGGCAAGT
TCACCTATGCGATCGGCGCCAATGAGCAGGCGGCGCGCATCTCGGGCATCGAGGTCGACCGGCACCTAATCAAGGTCTAC
GGCGTCGCCGGGCTGCTCGGCGGTCTTGCGGGCATCGTGACCGCAGCTCGCGCCCAGACGGCGCAGGCCGGCATGGGCAC
CATGTATGAGCTCGATGCCATCGCGGCGGCGGTCATCGGCGGCGCCTCACTGTCCGGCGGTGTCGGCCGCATCACCGGAA
CCGTGATCGGCACGATCATCCTGGGCACCATGACCTCGGGCTTCACCTTCCTACGCGTCGATGCCTTCTACCAAGAGATC
ATCAAGGGCCTGATCATCATCGCTGCGGTGGCGGCCGATGTGTACCGACAGAAGAAGCGGGTGAAGAAAGCGTAA

Upstream 100 bases:

>100_bases
GAAGGCCGCATGACCGGAATACTGGACCGCGCCGAGGCCGATCAGCTCAAGATCATGGAACTGGCGGCAAAGTAGTTCCG
AAAAAAAGGGAGGGGATAAA

Downstream 100 bases:

>100_bases
GCCCGCGCTTAAGCCCGCGGCTTTCCTCGCACTCGCTAACACAAATTCACTGTACGGACGCTGACAGGTCGCCGTACATC
GTGGAACAACAAGTATCGGA

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MFVNNSSAEGVAVAAPVATRRRLPVEANILLILIGIALVFELLGWVVVGQSFLMNPQRLTILILQVSVIGIIAIGVTQVI
ITGGIDLSSGSVVGLSAMVAASDAQSSAWTKVLYPSMTDLPVAVPILVGLAIGLLAGVINGMLIVYTKIPPFIATLGMMV
SARGLSKWYTKGQPVSGLTDEFSVIGSGIWPVVIFLSVAVIFHVLLRYTRYGKFTYAIGANEQAARISGIEVDRHLIKVY
GVAGLLGGLAGIVTAARAQTAQAGMGTMYELDAIAAAVIGGASLSGGVGRITGTVIGTIILGTMTSGFTFLRVDAFYQEI
IKGLIIIAAVAADVYRQKKRVKKA

Sequences:

>Translated_344_residues
MFVNNSSAEGVAVAAPVATRRRLPVEANILLILIGIALVFELLGWVVVGQSFLMNPQRLTILILQVSVIGIIAIGVTQVI
ITGGIDLSSGSVVGLSAMVAASDAQSSAWTKVLYPSMTDLPVAVPILVGLAIGLLAGVINGMLIVYTKIPPFIATLGMMV
SARGLSKWYTKGQPVSGLTDEFSVIGSGIWPVVIFLSVAVIFHVLLRYTRYGKFTYAIGANEQAARISGIEVDRHLIKVY
GVAGLLGGLAGIVTAARAQTAQAGMGTMYELDAIAAAVIGGASLSGGVGRITGTVIGTIILGTMTSGFTFLRVDAFYQEI
IKGLIIIAAVAADVYRQKKRVKKA
>Mature_344_residues
MFVNNSSAEGVAVAAPVATRRRLPVEANILLILIGIALVFELLGWVVVGQSFLMNPQRLTILILQVSVIGIIAIGVTQVI
ITGGIDLSSGSVVGLSAMVAASDAQSSAWTKVLYPSMTDLPVAVPILVGLAIGLLAGVINGMLIVYTKIPPFIATLGMMV
SARGLSKWYTKGQPVSGLTDEFSVIGSGIWPVVIFLSVAVIFHVLLRYTRYGKFTYAIGANEQAARISGIEVDRHLIKVY
GVAGLLGGLAGIVTAARAQTAQAGMGTMYELDAIAAAVIGGASLSGGVGRITGTVIGTIILGTMTSGFTFLRVDAFYQEI
IKGLIIIAAVAADVYRQKKRVKKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=39.4039735099338, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1788471, Length=288, Percent_Identity=40.625, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1790524, Length=291, Percent_Identity=37.4570446735395, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI145693152, Length=285, Percent_Identity=36.4912280701754, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788896, Length=286, Percent_Identity=32.1678321678322, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1789992, Length=345, Percent_Identity=28.695652173913, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI145693214, Length=245, Percent_Identity=37.9591836734694, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082395, Length=304, Percent_Identity=32.8947368421053, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787794, Length=309, Percent_Identity=30.7443365695793, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787793, Length=302, Percent_Identity=32.4503311258278, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35889; Mature: 35889

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVNNSSAEGVAVAAPVATRRRLPVEANILLILIGIALVFELLGWVVVGQSFLMNPQRLT
CCCCCCCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ILILQVSVIGIIAIGVTQVIITGGIDLSSGSVVGLSAMVAASDAQSSAWTKVLYPSMTDL
HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEHHHHHHHHCCCCCCCHHHEECCCCCCC
PVAVPILVGLAIGLLAGVINGMLIVYTKIPPFIATLGMMVSARGLSKWYTKGQPVSGLTD
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EFSVIGSGIWPVVIFLSVAVIFHVLLRYTRYGKFTYAIGANEQAARISGIEVDRHLIKVY
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHHHHHH
GVAGLLGGLAGIVTAARAQTAQAGMGTMYELDAIAAAVIGGASLSGGVGRITGTVIGTII
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LGTMTSGFTFLRVDAFYQEIIKGLIIIAAVAADVYRQKKRVKKA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVNNSSAEGVAVAAPVATRRRLPVEANILLILIGIALVFELLGWVVVGQSFLMNPQRLT
CCCCCCCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ILILQVSVIGIIAIGVTQVIITGGIDLSSGSVVGLSAMVAASDAQSSAWTKVLYPSMTDL
HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEHHHHHHHHCCCCCCCHHHEECCCCCCC
PVAVPILVGLAIGLLAGVINGMLIVYTKIPPFIATLGMMVSARGLSKWYTKGQPVSGLTD
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EFSVIGSGIWPVVIFLSVAVIFHVLLRYTRYGKFTYAIGANEQAARISGIEVDRHLIKVY
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHHHHHH
GVAGLLGGLAGIVTAARAQTAQAGMGTMYELDAIAAAVIGGASLSGGVGRITGTVIGTII
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LGTMTSGFTFLRVDAFYQEIIKGLIIIAAVAADVYRQKKRVKKA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]