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The map label for this gene is ccmF [H]

Identifier: 220905628

GI number: 220905628

Start: 2852331

End: 2854310

Strand: Reverse

Name: ccmF [H]

Synonym: Ddes_2368

Alternate gene names: 220905628

Gene position: 2854310-2852331 (Counterclockwise)

Preceding gene: 220905629

Following gene: 220905627

Centisome position: 99.33

GC content: 61.26

Gene sequence:

>1980_bases
ATGTACGTTTTTGCCTTTGCCCTCCTTCTTTTGGCCTTGCTCGCCTCCTTGGGCGGCGGCGGTCTGGCCCTGCTGCAACT
GTGGCAAGGACGCGAAGACTCCCTGCGCCTTGTGGAAAAAACCCATATAGTCGTCAGCGGCGCTCTGCTTGTTGCTTCGG
CCATATTGCTGCACGCGCTTTTCTGGTTTGATTTTCAGGTGCAGTATGTAGCCAGCTATACCGACCGCATCCTGCCGGTC
TTTTACCGCCTTACGGCTTTCTGGGCCGGACAGCCCGGCTCCATGCTTTTCTGGGCGCTGGCCGTTGGCGTCAGTGGCTC
TCTTTTCGCATGTACGCGCGCCTATAAGGGCATCAGCCGTCCCACACGGCTGTGGTACTGGGCCTTTTTTTACACGATCA
TGGCCTTTTTTGCCCTTATTCTCACGAACTGGAGCAATCCTTTCATGCTTCAGACCCCTGTTCCGGCCGATGGCAACGGC
CTGAACCCCCTGCTGCAAAATCCCGGCATGATCATTCACCCGCCCCTGCTCTTTCTCGGGTACGGCGGTTTTACCATTCC
TGCCTGCCTTGCCCTGGCCCAGGCGCTTTCGGGCAAGGCCGATACCGAAGGGGAATGGTTCCGCATTTCGAGGCCGGTGA
TTATTCTCGCATGGCTGTTCCTTACCGCGGGCATTGTGCTTGGCGCGTGGTGGGCCTATATGGAGCTTGGCTGGGGCGGC
TACTGGGCCTGGGACCCGGTGGAAAACGCCTCGCTCATTCCCTGGCTCATCGCCTCCGCAGCCCTGCATACCCTTATTGT
TGAGGACCGTCGCAACAAACTCGGACGCGTCAACGTGGCCATGATGGCCCTGACCACGATTTCCGCTTTTTTTGCCACAT
ATCTTGTCCGCAGCGGTGTTATCGACTCCGTACACGCTTTTGGCGACGGCAGTGTTGGGACTCCCCTGACCCTGTTCATC
CTGGCGGGGCTGGCTGTTTCCCTGTGGGTTCCGCTGGCAAGCCCCTGCCGTGGCCGCCCCCTGTCGGGCCTGGACAGCCG
TGAGGGCTTTCTTACCCTCGTGGCCTGGGTGCTGCTGGCGCTTGCGGGCATTATTCTGGTGGCGACCATGTGGCCGGTCA
TCAGCAAGTTGTGGTCCGCCGCTCCCCGCGGCCTTGACGCCAATTTCTACAATCGCGTGTGCCTGCCCCTGGGGGCGCTG
CTCATGCTCATGATGGCGGCCTGTCCCTGGCTTGGCTGGGGTGGGGGTGTACGCAACAAAAAAGCCTTTTTCGCCGTGGT
GGCTACCTTTGCCGTCAGCGGCGCGGCCATCTGGCTTATGGGATACCGCCAGCCTACGGCCCTGCTCGGGGCCGCATCTT
CCGTAGCCATCCTGACAGGCATCGTTTTTCAGCTGGCCGACAGATCCGTGCGGCGTCAGCCCAACAGCCTGGGCGCGCTG
GGCGCACATCTGGGCATGGCGCTGATGGCTATCGGCATAGCCTTTTCCGGGCCGTACAAGATTGAGCGCGACATCCACTT
TACCGTGGGCCAGACCCAGACCCTGGCCGGGTACAAGGCGACCCTGCTGGAACTGGAAGAAGGCCGCCGCCCCGGCTATG
AGTACATCGCCGCCAAGGTGCGCATTACAGACAAGGACGGCAAGGAACTTGGTGTTGTGGCGCCAGAGCGCCGCCTGTAC
GAAAAATTCGGCAGCATGCAGTTTTCCGAGGTGGACGTGATCCCGAGCCTTGGGGACGAGCTTTACGCCTCTTTGCTGGG
GCTTGATGAAGACTCCCATGTGGTGGTCAAGCTCAGCGTGGAACCTCTTGTCAACTGGCTGTGGATAGGCGGCACCATCA
TGTGTCTTGTGCCCCTGCTGGGCTTGCGCCGCCGCAAGCCCGCCGACGCTGCCGAGGCCGCGGAACTGGCCGATGGCCTG
GACGAAGATGACGCCGTGCCCGATGATCCCGGGTCCGACGGCAAACATGGCGCGGCCTAG

Upstream 100 bases:

>100_bases
CCCGGCATTGCCGGACATATTGCGCATGGGGCGCGCCTGCCGGGTCCGGCATGGTGCATGACCCCGCAGCACGGTCCACG
AGGCCGGTAAAAGGAGTCAC

Downstream 100 bases:

>100_bases
CCCGCCGGAGCGCCCTTAGTGCTGGAACTTGTGCGTGTTGCCAAGACCTATGGGGTCAAGGTTATCTTCAAGGACGTGAA
CTGCGCCTTTAGCGGGGGCA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MYVFAFALLLLALLASLGGGGLALLQLWQGREDSLRLVEKTHIVVSGALLVASAILLHALFWFDFQVQYVASYTDRILPV
FYRLTAFWAGQPGSMLFWALAVGVSGSLFACTRAYKGISRPTRLWYWAFFYTIMAFFALILTNWSNPFMLQTPVPADGNG
LNPLLQNPGMIIHPPLLFLGYGGFTIPACLALAQALSGKADTEGEWFRISRPVIILAWLFLTAGIVLGAWWAYMELGWGG
YWAWDPVENASLIPWLIASAALHTLIVEDRRNKLGRVNVAMMALTTISAFFATYLVRSGVIDSVHAFGDGSVGTPLTLFI
LAGLAVSLWVPLASPCRGRPLSGLDSREGFLTLVAWVLLALAGIILVATMWPVISKLWSAAPRGLDANFYNRVCLPLGAL
LMLMMAACPWLGWGGGVRNKKAFFAVVATFAVSGAAIWLMGYRQPTALLGAASSVAILTGIVFQLADRSVRRQPNSLGAL
GAHLGMALMAIGIAFSGPYKIERDIHFTVGQTQTLAGYKATLLELEEGRRPGYEYIAAKVRITDKDGKELGVVAPERRLY
EKFGSMQFSEVDVIPSLGDELYASLLGLDEDSHVVVKLSVEPLVNWLWIGGTIMCLVPLLGLRRRKPADAAEAAELADGL
DEDDAVPDDPGSDGKHGAA

Sequences:

>Translated_659_residues
MYVFAFALLLLALLASLGGGGLALLQLWQGREDSLRLVEKTHIVVSGALLVASAILLHALFWFDFQVQYVASYTDRILPV
FYRLTAFWAGQPGSMLFWALAVGVSGSLFACTRAYKGISRPTRLWYWAFFYTIMAFFALILTNWSNPFMLQTPVPADGNG
LNPLLQNPGMIIHPPLLFLGYGGFTIPACLALAQALSGKADTEGEWFRISRPVIILAWLFLTAGIVLGAWWAYMELGWGG
YWAWDPVENASLIPWLIASAALHTLIVEDRRNKLGRVNVAMMALTTISAFFATYLVRSGVIDSVHAFGDGSVGTPLTLFI
LAGLAVSLWVPLASPCRGRPLSGLDSREGFLTLVAWVLLALAGIILVATMWPVISKLWSAAPRGLDANFYNRVCLPLGAL
LMLMMAACPWLGWGGGVRNKKAFFAVVATFAVSGAAIWLMGYRQPTALLGAASSVAILTGIVFQLADRSVRRQPNSLGAL
GAHLGMALMAIGIAFSGPYKIERDIHFTVGQTQTLAGYKATLLELEEGRRPGYEYIAAKVRITDKDGKELGVVAPERRLY
EKFGSMQFSEVDVIPSLGDELYASLLGLDEDSHVVVKLSVEPLVNWLWIGGTIMCLVPLLGLRRRKPADAAEAAELADGL
DEDDAVPDDPGSDGKHGAA
>Mature_659_residues
MYVFAFALLLLALLASLGGGGLALLQLWQGREDSLRLVEKTHIVVSGALLVASAILLHALFWFDFQVQYVASYTDRILPV
FYRLTAFWAGQPGSMLFWALAVGVSGSLFACTRAYKGISRPTRLWYWAFFYTIMAFFALILTNWSNPFMLQTPVPADGNG
LNPLLQNPGMIIHPPLLFLGYGGFTIPACLALAQALSGKADTEGEWFRISRPVIILAWLFLTAGIVLGAWWAYMELGWGG
YWAWDPVENASLIPWLIASAALHTLIVEDRRNKLGRVNVAMMALTTISAFFATYLVRSGVIDSVHAFGDGSVGTPLTLFI
LAGLAVSLWVPLASPCRGRPLSGLDSREGFLTLVAWVLLALAGIILVATMWPVISKLWSAAPRGLDANFYNRVCLPLGAL
LMLMMAACPWLGWGGGVRNKKAFFAVVATFAVSGAAIWLMGYRQPTALLGAASSVAILTGIVFQLADRSVRRQPNSLGAL
GAHLGMALMAIGIAFSGPYKIERDIHFTVGQTQTLAGYKATLLELEEGRRPGYEYIAAKVRITDKDGKELGVVAPERRLY
EKFGSMQFSEVDVIPSLGDELYASLLGLDEDSHVVVKLSVEPLVNWLWIGGTIMCLVPLLGLRRRKPADAAEAAELADGL
DEDDAVPDDPGSDGKHGAA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=608, Percent_Identity=34.8684210526316, Blast_Score=280, Evalue=3e-76,
Organism=Escherichia coli, GI1790511, Length=586, Percent_Identity=32.9351535836177, Blast_Score=221, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71458; Mature: 71458

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVFAFALLLLALLASLGGGGLALLQLWQGREDSLRLVEKTHIVVSGALLVASAILLHAL
CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWFDFQVQYVASYTDRILPVFYRLTAFWAGQPGSMLFWALAVGVSGSLFACTRAYKGISR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
PTRLWYWAFFYTIMAFFALILTNWSNPFMLQTPVPADGNGLNPLLQNPGMIIHPPLLFLG
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCCCEEEECCHHHHC
YGGFTIPACLALAQALSGKADTEGEWFRISRPVIILAWLFLTAGIVLGAWWAYMELGWGG
CCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YWAWDPVENASLIPWLIASAALHTLIVEDRRNKLGRVNVAMMALTTISAFFATYLVRSGV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDSVHAFGDGSVGTPLTLFILAGLAVSLWVPLASPCRGRPLSGLDSREGFLTLVAWVLLA
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LAGIILVATMWPVISKLWSAAPRGLDANFYNRVCLPLGALLMLMMAACPWLGWGGGVRNK
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KAFFAVVATFAVSGAAIWLMGYRQPTALLGAASSVAILTGIVFQLADRSVRRQPNSLGAL
HHHHHHHHHHHHCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GAHLGMALMAIGIAFSGPYKIERDIHFTVGQTQTLAGYKATLLELEEGRRPGYEYIAAKV
HHHHHHHHHHHHHHCCCCEEEECCEEEECCCCEECCCHHHHHHHHHCCCCCCCCEEEEEE
RITDKDGKELGVVAPERRLYEKFGSMQFSEVDVIPSLGDELYASLLGLDEDSHVVVKLSV
EEECCCCCEECCCCCHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEEH
EPLVNWLWIGGTIMCLVPLLGLRRRKPADAAEAAELADGLDEDDAVPDDPGSDGKHGAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYVFAFALLLLALLASLGGGGLALLQLWQGREDSLRLVEKTHIVVSGALLVASAILLHAL
CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWFDFQVQYVASYTDRILPVFYRLTAFWAGQPGSMLFWALAVGVSGSLFACTRAYKGISR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
PTRLWYWAFFYTIMAFFALILTNWSNPFMLQTPVPADGNGLNPLLQNPGMIIHPPLLFLG
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCCCEEEECCHHHHC
YGGFTIPACLALAQALSGKADTEGEWFRISRPVIILAWLFLTAGIVLGAWWAYMELGWGG
CCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YWAWDPVENASLIPWLIASAALHTLIVEDRRNKLGRVNVAMMALTTISAFFATYLVRSGV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDSVHAFGDGSVGTPLTLFILAGLAVSLWVPLASPCRGRPLSGLDSREGFLTLVAWVLLA
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LAGIILVATMWPVISKLWSAAPRGLDANFYNRVCLPLGALLMLMMAACPWLGWGGGVRNK
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KAFFAVVATFAVSGAAIWLMGYRQPTALLGAASSVAILTGIVFQLADRSVRRQPNSLGAL
HHHHHHHHHHHHCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GAHLGMALMAIGIAFSGPYKIERDIHFTVGQTQTLAGYKATLLELEEGRRPGYEYIAAKV
HHHHHHHHHHHHHHCCCCEEEECCEEEECCCCEECCCHHHHHHHHHCCCCCCCCEEEEEE
RITDKDGKELGVVAPERRLYEKFGSMQFSEVDVIPSLGDELYASLLGLDEDSHVVVKLSV
EEECCCCCEECCCCCHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEEH
EPLVNWLWIGGTIMCLVPLLGLRRRKPADAAEAAELADGLDEDDAVPDDPGSDGKHGAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]