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The map label for this gene is ccmC [H]

Identifier: 220905625

GI number: 220905625

Start: 2850245

End: 2850937

Strand: Reverse

Name: ccmC [H]

Synonym: Ddes_2365

Alternate gene names: 220905625

Gene position: 2850937-2850245 (Counterclockwise)

Preceding gene: 220905626

Following gene: 220905624

Centisome position: 99.22

GC content: 63.35

Gene sequence:

>693_bases
ATGCCCAAGCTTTCGGCGCTGCCGCAACTGCTGGTATTTCTGGGTGGCCTGGCTTTTGCCGCCTGCCAGTGGCTCATTTA
TGCCTATGCCCCGGTGGAGCAGACCCTGGGGCTGGCGCAGAAAATTTTTTACATCCACCTTCCGCTGGCGTGGTGGGCGC
TCATGAGCTTTCTGGCGGTCTTTGCCGGTTCCGTTGCCTACCTGTGGCGGCGTAATCCCGCCGCCGACCGCCTGTGCGCC
GCCGCCGCCGAAGTGGGCGTGCTGTTGAGCGGCCTGGCCCTTGTGACGGGCATGCTGTGGGCGCGCCGCTCCTGGGGCGT
CTGGTGGACGTGGGACCCGAGACTCACGACAACGCTGATCATGTGGTTCGTCTACGCGGGCTATCTGGTCTTGCGCGGGC
TGGATCTGCCGCCGCAGCGCCGCAATATGGTCTGCGCGGTGGTGGGCGTGGTGGCTTTTCTGGATGTGCCGCTGGTTTTT
TTATCCGCGCGCATATGGCGCTCCATCCATCCTTCTGTGTTTGCCAGCAAGGAAGGCGGCCTTGAGCCGGAGATGCGCCT
TACCGTCATAGCCTGTGTGCTTTCGTTCGGCCTGTTATGGGCGGGATTGGTGTGGCTGCGCAAGCGTCAGCTTGATCTGG
CCGCCCGCCTGGACAGGCTGCAGCAGAGCCACTGTACGCCGGAAGGTCTGTAA

Upstream 100 bases:

>100_bases
ATGGGCCGGGCGCGTGGCTTGGGGTTGCGGCCGCCTTTGACGCGGTATTTCTGGGCGCCGGGCTTTTGCTGTTCGGCCAT
ATCTACGCGGGAGACGAATA

Downstream 100 bases:

>100_bases
ACGCACGGCCTGCGCCGTCATGCGCCGCCGGTCCGCAGGGCCGTAAGGCATTCCCGGAGGATATATGGATACCCTGACCT
GGATAATCATGGCCAATGCC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPKLSALPQLLVFLGGLAFAACQWLIYAYAPVEQTLGLAQKIFYIHLPLAWWALMSFLAVFAGSVAYLWRRNPAADRLCA
AAAEVGVLLSGLALVTGMLWARRSWGVWWTWDPRLTTTLIMWFVYAGYLVLRGLDLPPQRRNMVCAVVGVVAFLDVPLVF
LSARIWRSIHPSVFASKEGGLEPEMRLTVIACVLSFGLLWAGLVWLRKRQLDLAARLDRLQQSHCTPEGL

Sequences:

>Translated_230_residues
MPKLSALPQLLVFLGGLAFAACQWLIYAYAPVEQTLGLAQKIFYIHLPLAWWALMSFLAVFAGSVAYLWRRNPAADRLCA
AAAEVGVLLSGLALVTGMLWARRSWGVWWTWDPRLTTTLIMWFVYAGYLVLRGLDLPPQRRNMVCAVVGVVAFLDVPLVF
LSARIWRSIHPSVFASKEGGLEPEMRLTVIACVLSFGLLWAGLVWLRKRQLDLAARLDRLQQSHCTPEGL
>Mature_229_residues
PKLSALPQLLVFLGGLAFAACQWLIYAYAPVEQTLGLAQKIFYIHLPLAWWALMSFLAVFAGSVAYLWRRNPAADRLCAA
AAEVGVLLSGLALVTGMLWARRSWGVWWTWDPRLTTTLIMWFVYAGYLVLRGLDLPPQRRNMVCAVVGVVAFLDVPLVFL
SARIWRSIHPSVFASKEGGLEPEMRLTVIACVLSFGLLWAGLVWLRKRQLDLAARLDRLQQSHCTPEGL

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=193, Percent_Identity=26.9430051813472, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 25754; Mature: 25623

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLSALPQLLVFLGGLAFAACQWLIYAYAPVEQTLGLAQKIFYIHLPLAWWALMSFLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAGSVAYLWRRNPAADRLCAAAAEVGVLLSGLALVTGMLWARRSWGVWWTWDPRLTTTLI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHH
MWFVYAGYLVLRGLDLPPQRRNMVCAVVGVVAFLDVPLVFLSARIWRSIHPSVFASKEGG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC
LEPEMRLTVIACVLSFGLLWAGLVWLRKRQLDLAARLDRLQQSHCTPEGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PKLSALPQLLVFLGGLAFAACQWLIYAYAPVEQTLGLAQKIFYIHLPLAWWALMSFLAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAGSVAYLWRRNPAADRLCAAAAEVGVLLSGLALVTGMLWARRSWGVWWTWDPRLTTTLI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHH
MWFVYAGYLVLRGLDLPPQRRNMVCAVVGVVAFLDVPLVFLSARIWRSIHPSVFASKEGG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC
LEPEMRLTVIACVLSFGLLWAGLVWLRKRQLDLAARLDRLQQSHCTPEGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]